Tessaracoccus flavus: RPIT_10720
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Entry
RPIT_10720 CDS
T04688
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tfl
Tessaracoccus flavus
Pathway
tfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPIT_10720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfl03400
]
RPIT_10720
Enzymes [BR:
tfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPIT_10720
DNA repair and recombination proteins [BR:
tfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RPIT_10720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Glyco_tran_WecG
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AQP45208
UniProt:
A0A1Q2CGG1
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All DBs
Position
complement(2285277..2288804)
Genome browser
AA seq
1175 aa
AA seq
DB search
MAAGCAATAWKDRTVKYPGLLPLLEADKALSATLADSRRSGVTTLDVTSVPAFFPLITAA
LAEESGRMVLLVTSTYREAEQLTAELSGLLGEDQVAYYPAWETLPHERLSPRADTVGRRL
AVLRRIAGAADEPAPQVIVAPVRSVLQPQVKGLADMVPVRIEVGREYPLEDLLRDLVGAA
YNRVDLVERRGEFAVRGGIVDIFPPTAEHPVRIDFFGDEVDEIRHFTVADQRSTGEQADW
VVAPPCRELLLTDSVRARARQIAAAHPELADMLSRVAEGHAVEGMEALTPALVDGLELLV
DVLPKGSLVLASSPELIRARAAELAQTSQEFLEASWAAAAGGGTSPIDLGESAYWSLGDV
RQHALAIGHGWWSLSPFAADDDAAAIDPDAPHSRTLKVSGSESFRGDMQAVTRHISARLA
DGWRIVLCVEGRGLAARMVEVLGEADIPAAVDDLSEAPQPGRVSIILTTLRQGWRAEAAK
VEVITETELTGQVATDRTERKLPARRKATIQPLELKSGDPVVHEQHGVGRFVELVTREVQ
GATRDYLVVEYAPSKRGHPGDRLYVPMDQLDQLSRYVGAEAPALDKMGGADWTKRKAKAR
KAVREISSELIKLYAARMATKGHSFAPDTVWQRELEDAFSYVETPDQLSAITEVKADMEN
LVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHYQTFAARFAGFPV
HLAQLSRFQTDAEAKKIIEGLAAGKIDVVIGTHRLLSKETQFKDLGLVVIDEEQRFGVEH
KERLKSMRLNVDVLSMSATPIPRTLEIAITGIREMSVIATPPEERHPVLTFAGPYDNAQV
KAAIRRELAREGQVFFVHNRVGTIEKTAAQLRELVPEARIVTAHGQMSEKRLEQVMLDFW
ERRADVLVSTTIVESGLNIQSANTLIIDSADKMGLSQLHQLRGRVGRSRERGYAYFLYPP
DKPLTEASHERLATMAANTDLGSGMAIAMRDLELRGAGNLLGEDQSGHIEGVGFDMYLRM
VGEAVANYRGDDTEPEPQMRIELPIEAHIPDDYIPSERLRLEMYKQIAEIRTEADIAAVL
AELTDRYGEPPASVESLLGVATLRMLAREHGIQEIVPQGKVVRLAPVSLPESKQLRLQRL
YPGSTVKTSVEQILVPKPDGDYLRWATTLLTQLFA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgggctgcgccgccactgcatggaaagatagaacagtgaagtaccccgggttg
ctcccgctcctcgaagccgacaaggcactgtccgccacgctggcggactcccggcgctca
ggggtcacgacgctcgacgtcacctccgtgcccgccttcttccctctcatcacggccgcc
ctggcggaggaatccggccgcatggtgctgctggtcacctcgacgtaccgggaggctgag
cagctcacggcggaactctccggcctactgggcgaggaccaggttgcctactacccagcc
tgggaaacgctgccgcacgagcggttgtcgccgcgggccgacacggtgggacgtcggttg
gccgtcctgcggcgcatagcgggcgctgcggatgagccggcaccccaggtgatcgtcgct
cccgtgcgctccgtcctccagccgcaggtcaaaggcctggcggacatggtgccggtgcgc
atcgaggtgggtcgggaatacccgctggaggacctgctcagggatctcgtgggcgccgcc
tacaaccgggtcgacctcgtcgagcgccgcggcgagttcgcggtccgtggcggcatcgtc
gacatcttcccgcccacggccgaacaccccgtccgcatcgacttcttcggcgacgaggtc
gatgagatccggcacttcaccgtcgcagatcagcgctcgaccggcgagcaggccgactgg
gtcgtcgcgcccccctgccgcgagctgctcctcaccgattcagtgcgtgcccgagccagg
cagatcgccgcggcgcatcccgagctggccgacatgctgagccgggtggcggaaggtcat
gccgtcgaggggatggaggcgctgaccccggcgctggtcgacgggctcgaattgctcgtc
gacgtgctgccgaagggctccctggtcctggcgtcgtcgcccgagctgatccgtgcgcga
gcggcagagctcgctcagaccagccaggagttcctggaggccagctgggccgcggcggcc
ggcggtggcacttcgcccatcgatctcggagaatcggcttactggagcctgggtgacgtg
cgtcagcacgccctggcgatcggtcacggctggtggtccctgtcgccgttcgccgccgac
gacgacgccgcagcgatcgatcccgacgcgccccactcccgcactctcaaggtgtcgggc
tcggagtcgttccgcggcgacatgcaggccgtcaccaggcacatctccgcgcggttggcc
gacggctggcgcatcgtcctgtgcgtcgaaggtcgggggctggctgcgcggatggtcgag
gtgctgggtgaggccgatatcccggctgccgtcgacgacctgtccgaggcgccgcagccg
gggagggtgtcgatcatcctcacgacgcttcgtcagggctggcgcgcggaggcggccaag
gtcgaggtcatcaccgagaccgaactcaccggccaggtggccaccgatcgcaccgagcgg
aagctccccgcccgccgcaaggccaccatccagccgctggagctcaagtcgggcgacccc
gtggtccacgagcagcacggcgtcggacgcttcgtcgagctcgtcacccgagaagtgcag
ggcgccacgcgcgactacctcgtcgtcgagtacgccccgagcaaacgggggcatccgggc
gatcgcctctacgttccgatggaccagctcgaccagttgagccgctacgtaggcgccgag
gctccggcgctcgacaagatgggcggggccgactggaccaagcgcaaggcgaaggcccgc
aaggcggtgcgcgagatctccagcgagctgatcaagctgtacgccgcgcggatggccacc
aagggccactcgttcgcgccggacaccgtctggcagcgcgagttggaggatgccttcagc
tacgtggagacccccgaccagctctccgccatcaccgaggtcaaggccgacatggagaat
ctcgtgccgatggaccgcctcatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtgcgggccgcgttcaaggcggtgcaggacggcaaacaggtggcggtgctcgtcccgacg
accctgctcgtcacgcagcactaccagaccttcgccgcgcgattcgcgggcttccccgtg
cacctggcgcagctctcgcgcttccagacggatgcggaggccaagaagatcatcgagggg
ttggccgccggcaagatcgacgtcgtcatcgggacccaccgcctcctcagcaaggagacc
cagttcaaggatctggggctggtggtgatcgacgaggagcagcgcttcggcgtcgagcac
aaggaacggctgaagtccatgcggctgaacgtcgatgtgctgtcgatgtcggcgacgccg
attccgcggacgctcgagatcgccatcaccggcatccgcgagatgagcgtcatcgccacc
ccgccggaggagcgccacccggtcctcaccttcgccggcccctacgacaacgcccaggtc
aaggccgcgatccgacgcgagctggcgcgggagggccaggtgttcttcgtccacaaccgc
gtcggcaccatcgagaagacggcggcgcagctgcgcgagctcgtccctgaggcgcgcatc
gtcactgcgcatggccagatgagtgagaagcggctggagcaggtgatgctcgacttctgg
gagcgacgcgcagacgtcctcgtctcgaccaccatcgtcgagtcgggcctgaacatccag
tcggccaacaccctcatcatcgacagcgccgacaagatgggcctctcgcaactgcaccag
ctgaggggacgggtgggccggtcgagagagcgtggctacgcctacttcctctacccgccg
gacaagcccctcaccgaggcgtcccacgagcgactggcgacgatggccgccaacaccgac
ctcggctcgggcatggccatcgcgatgcgggacctcgaactgcggggcgccgggaacctg
ctgggcgaggaccagtcgggacacatcgagggggtcgggttcgacatgtacctgcggatg
gtcggcgaggccgtcgcgaactaccgcggcgacgacaccgaacctgagccgcagatgcgg
atcgagctgcccatcgaggcgcacatccccgacgattacatcccgtcggagcggctgagg
ctggagatgtacaagcagatcgcggagatccggacggaggccgacatcgcagcggtcctg
gctgagctcaccgaccgttacggggagccgcccgcatcggtcgagtcgctcctcggggtc
gccacgctgcggatgctggcgcgcgaacacggcatccaggagatcgtgccgcagggcaag
gtggtgcggctggcacccgtctcgctgccggagtcgaaacagctgcggctgcagcgcctc
taccctgggtccacggtgaagacctcggtcgagcagatcctcgtccccaagcccgacggc
gactacctgcgctgggccaccaccctgctgacccagctcttcgcctga
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