Tessaracoccus flavus: RPIT_13140
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Entry
RPIT_13140 CDS
T04688
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tfl
Tessaracoccus flavus
Pathway
tfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RPIT_13140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfl03400
]
RPIT_13140
Enzymes [BR:
tfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RPIT_13140
DNA repair and recombination proteins [BR:
tfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RPIT_13140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AQP45635
UniProt:
A0A1Q2CHU6
LinkDB
All DBs
Position
complement(2845134..2847302)
Genome browser
AA seq
722 aa
AA seq
DB search
MTETEVLKIDGPDGIRDVKLTSALKVLWPDRGVTKRGLVEYLLTVAEPFLHLNGDRPMTL
QRFPEGIDGEEFFSKRPPRGAPDFLETVMCTYPSRRRHLQLVFDEPADLAWAAQMGTITF
HPWPVRTANLDNPDELRIDLDPQPGRDFKDAVEAAVALRELMAEVGLKAYAKTSGNRGVH
VYARIKPTHEFQDVRHGVIGIARELERRLPDLVTSSWWKEERGERVFVDFNQANRDRTIA
AAYSPRPLPGAPVSTPLTWDELVEAQPSDFTVLTVPPLLEQRPCPWSDIDDDPGDVTGAL
ALWEADLQRGLGELNFPPDYPKMPGEPPRVPPSKRRTDRADDEYLAPKAERDAGWGTAIA
PPYGPMLAKPVKKLPEGDFLYEPKWDGFRSIIWRSGDQVEIGSRNSRPMTRYFPELVEAI
IDNFPDHSAIDGEIIMVDPTTGDRLNFDTLQQRIHPAASRIEKLARETPASFVAFDLLAL
GQNNFVEKPFRERRAALEEALAHAEPPIYLTRATDDPDVAREWFEEFEGAGLDGVIAKSL
DEPYVEDKRVMYKLKHERTADCVVAGYRLYKDEADAIGSLLLGLYTDDGQLNSVGVIGAL
PMARRKELFEELQPLVTTFDDHPWAWAQPEETTPDNRDQSTPRTPTSAAHSRWNAKKDLS
FVPLRPERVVEVRYDHMEGDRFRHTAQWVGWREDRDPESCTYDQLEEPVSYDLTEVLRGP
DV
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgactgagacagaagtgctcaagatcgacggccccgacggcatccgggacgtgaagctc
acgagcgcgctcaaggtgctctggcccgaccggggcgtcacgaaacgcgggctggtggag
tatctgctcacggtcgcggagcccttcctgcacctgaacggggaccgcccgatgacactg
cagcggttcccggagggcatcgacggggaggagttcttctccaagcgcccgccccgaggc
gcgccggacttcctcgagaccgtcatgtgcacgtacccgtccaggcgtcggcacctgcag
ctcgtcttcgacgaacccgccgacctcgcgtgggcggcacagatgggcaccatcaccttc
catccctggcccgtccgaaccgccaacctggacaacccggacgagctgcggatcgacctc
gacccgcagccgggccgcgacttcaaggacgccgtcgaggctgctgtcgccctgcgggaa
ctcatggcggaggtggggctcaaggcatacgcgaagacatcgggcaatcgcggcgtgcac
gtgtacgcgaggatcaagcccacgcacgagttccaggacgtccgccacggggtcatcggc
atcgcccgcgaactggagcgccggttgcccgatctggtgaccagctcgtggtggaaagag
gagcgcggcgagagggtgttcgtcgacttcaaccaggccaaccgggaccggaccatcgcc
gccgcctattcgccccggccgctcccgggggcaccggtctccacccccctgacgtgggat
gaacttgtcgaggcccagccgtccgatttcacggtgctgacggtgcccccactcctcgag
cagcgaccatgcccgtggtctgacatcgacgacgaccccggagacgtcaccggggcactc
gcgctctgggaggccgacctgcagcgcggtctgggggagctcaacttcccgcccgactac
cccaagatgcccggcgaacccccgagggtgccgccgtcgaaacgccggaccgatcgcgcc
gacgacgagtacctcgcgcccaaggcggagcgggacgccggatggggcacggcgatcgcg
ccgccctacgggcccatgctcgctaagcccgtcaagaagcttcccgagggggacttcctg
tacgaaccgaagtgggatgggttcaggtcgatcatctggcggtcgggcgaccaggtggag
atcggcagccgtaactcccgccccatgacgcgctacttcccggagctcgtcgaggcgatc
atcgacaacttccccgaccattcggcgatcgacggcgagatcatcatggtcgaccccacc
accggcgaccggctcaacttcgacacgctccaacagcggattcacccggcggcctcccgc
atagagaagctcgccagggaaacgcctgcgagcttcgtcgccttcgacctcctggcgctg
ggccagaacaacttcgtcgaaaagccgttccgggagcgccgggcggcactcgaagaagcg
ctggcgcacgcagagccccccatctacctcacgcgcgccaccgatgatccggacgtggcg
cgggaatggttcgaggagttcgagggggcgggcctcgacggggtaatcgcgaagtcgctc
gacgagccctacgtcgaggacaagcgggtgatgtacaagctcaagcatgagcgcaccgcc
gactgcgtcgtcgccggttaccgtctctacaaggatgaggcggacgcgatcggctcgctg
ctgctggggctctacaccgacgacggccagctgaactcggtcggtgtcatcggggcgctg
cccatggcccgccgcaaggagttgttcgaggagctccagccgctggtgacgacgttcgac
gaccatccatgggcctgggcgcagccggaggagacgacgccggacaaccgggatcagtcg
acccctcggacgccgacctccgcagcccactcccggtggaacgccaagaaggacctgtcg
ttcgtcccgctgcggcccgagcgggtggtcgaggtccgctacgaccacatggaaggcgac
cggttccgccacaccgcccagtgggtcggctggcgcgaggaccgcgatcccgagtcgtgc
acctatgaccagctcgaggagccggtcagctacgacctgacggaggtcctccgcggccca
gacgtctga
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