Tepidiforma flava: O0235_11040
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Entry
O0235_11040 CDS
T08993
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tfla
Tepidiforma flava
Pathway
tfla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O0235_11040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfla03400
]
O0235_11040 (mfd)
Enzymes [BR:
tfla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O0235_11040 (mfd)
DNA repair and recombination proteins [BR:
tfla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O0235_11040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
UB2H
RecG_dom3_C
Mu-transpos_C
FR47
Motif
Other DBs
NCBI-ProteinID:
WBL35313
UniProt:
A0AA49I912
LinkDB
All DBs
Position
complement(1966575..1970120)
Genome browser
AA seq
1181 aa
AA seq
DB search
MLPGGKVEGEAAAAAEGSDLAGELAGVTAAVAEELAPLLARGDGCVRLSAPESARAYVAA
ALASGHAGPLLAAVPTALAAQALADDLELLSDRPVIRLPQRDALPYEFTRDDPSAGVERA
RALRALGGEAPAIVVGTWAAITERTAPPAPEAEDLRLETGAAARPGDVLAWLEGAGYAIE
PLADAPGTAARRGGLIDIFPAGFERPVRVEFFGDTVESIRLVDLATQRSAGRLDAVLVPP
VSTSLGAGRAAARALAERLTAQGDEAEAVVEQVEAVAAGGRTDYHQFLEPLLYRATALDH
LGGAAVVVVFDPEDGRQALEQALEFERRARAEMEARGAIPAGLPDLREEPGAAAAALLGR
AAYVLERFGTAERGARELPVQAAPGFGGRLRVVAQQAEAWRREGRRVVVASLQALRLADV
FEAEGTRSAKTRALGGAPPGGSVTLVPAAVSSGIVTAAGTVVLADAEVFGFRKRRKPTRP
HHGVRPDLVESLEVGDYVVHADHGIARYGGLVRRSVEGVEREYLELQYAEGDRLYVPADQ
LEALSRYVGPSDHPPALTRLGTQDWARSKRRVKQAVVQMARDLLELYAKRQLVPGHAFRE
DTPWQMEMEASFPYVETQDQLAAILEVKADMERPRPMDRLICGDVGYGKTEVEVRAAFKA
VMDGKQVAVLVPTTVLAEQHGETFRERTAGFPVRVEVLSRFRSAEEQRRILADLAAGEVD
IVVGTHRLLQKDVVFKDLGLVIIDEEQRFGVSHKERLRQMRAEVDTLTLSATPIPRTLQM
SLVGIRDMSTIMTPPEERQPIRTYVLAWDDEILREAIERELQRGGQVFFVHNRVQNIERI
AKRVMELAPGARVAIGHGQMPEEQLERVMLEFQAGEHDVLVCTTIIESGLDIPNANTIII
NEANRLGLAQLYQLRGRVGRSANRAYAYLLYDKDRALSEAAQKRLEAIFEASELGAGFQL
ALRDLEIRGAGNVLGTEQSGHIAEVGFELYTKLVAEAVAALKRGMGEELPRAAEPEPPPP
VVDLPVSAHIPESYVGDIHARLNLYQRIAHLGTVEAVAEMHEELRDRFGPVPLAVENLLY
VALVRNLAKRAGIEAIKTDEQMFHLYVRGGTTPELRERVARLGLGERVARLGLGELVLTG
PKQVRIDRVGAGEGWMPLLVRVLRAMGGGRPAAERAGNERV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtgctaccgggcggtaaagtggagggcgaggcggctgctgccgctgagggttcggacctg
gctggtgaactcgcgggcgtcacggccgcggtcgccgaggagctggccccgctgctggcg
cgcggggacggctgcgtgcgcctttcggcgcccgagagcgcgcgggcgtacgtcgcggcg
gcgctggcgagcgggcacgccgggccgcttctcgcggccgtgccgacggccctggccgcg
caggcgctggctgatgatctcgagctcctgagcgaccggccggtgattcgcctgccgcag
cgggatgcgctgccgtacgagttcacccgggacgatccttcggcgggggtggagcgggcg
cgggcgctgcgggcgctcgggggcgaagcgccggcgatcgtcgtggggacgtgggccgcg
atcaccgagcgcacggcgccgccggccccggaggcggaggacctgcggctggagaccggc
gcagcggcgcggccgggcgacgtactggcctggctggagggcgcgggctacgccatcgag
ccgctggccgacgcgccggggaccgcggcgcgccggggcgggctcatcgatatcttcccg
gccgggttcgaacggccggtgcgggtggagtttttcggcgacacggtcgagagcatccgg
ctggtcgaccttgcgacgcagcggagcgcgggccggctggatgccgtgctcgtgccgccg
gtgtcgacctcgctgggcgccggccgggcggcagcgcgggcgctggcggagcggctcacc
gcgcagggcgatgaggcggaggcggtcgtcgagcaggtcgaggcagtcgcagcgggcggg
cggaccgactaccaccagttcctcgagccgctgctgtaccgggcgacggcgctggaccac
ctcggaggcgcggccgtcgtggtcgtcttcgaccccgaagacgggcggcaggcgctcgag
caggcgctggagttcgaacggcgggctcgggcggagatggaagcgcggggcgcgatcccg
gccgggctgccggacctgcgcgaggagccgggggcggcagcggcggcgctgctggggcgg
gccgcctacgtgctggaacggttcgggacggccgagcgcggggcgcgcgagctgccggtg
caggccgcgccggggttcggcgggcggcttcgcgtcgtggcgcagcaggcggaggcgtgg
cggcgggagggccggcgggtcgtggtcgcgtcgctgcaggccctgcggctggcggacgtt
ttcgaggcggagggcacgcggagcgcgaagacccgcgcactgggcggcgcgcctccgggc
gggagcgtgacgctggtgccggcggcggtgtcgagcggcatcgtcacggccgcggggacg
gtagtgctggccgatgcggaggtcttcgggttccggaagcggcggaagccgacgcggccg
caccacggcgttcggccggacctcgtcgaaagcctcgaggtcggcgactacgtggtccac
gcggaccacggcatcgcgcggtacggcgggctggtgcggcggtcggtggagggagtcgag
cgggagtatctcgagctgcagtacgcggagggcgaccggctgtacgtgccggccgaccag
ctggaggcgctgagccggtacgtggggccgagcgatcacccgccggcgctgacgcggctc
ggcacacaggactgggcgcgctcgaagcggcgggtgaagcaggcggtggtgcagatggcg
cgcgacctgctggagctgtacgcgaagcggcagctggtgcccgggcacgccttccgggag
gacacgccgtggcagatggagatggaggcgtcattcccgtacgtcgaaacgcaggaccag
ctggcggcgattctcgaggtgaaggcggacatggagcggccgcggccgatggaccggctc
atctgcggggatgtcggctacgggaaaacggaggtcgaggtgcgggccgcgttcaaagct
gtcatggacgggaagcaggtagcggtgctggtgccgacgacggtgctcgcggagcagcac
ggggagacgttccgggagcggacggccgggtttccggtgcgggtggaggtgctctcgcgg
ttccggtcggcggaggagcagcggcggattctcgcggacctcgcggcgggggaggtggac
atcgtggtggggacgcaccggctgctgcagaaggacgtggtgttcaaggacctcgggctc
gtgatcatcgacgaagagcagcggttcggggtgagccacaaggagcggctgcggcagatg
cgggcggaggtggacacgctgacgctctcggcgacgccgatcccgcggacgctgcagatg
tcgctcgtgggcatccgcgacatgagcacgatcatgacgccgccggaggagcggcagccg
attcgcacctacgtgctggcgtgggacgacgaaattctgcgggaggcgatcgagcgcgag
ctgcagcggggcgggcaggtgttcttcgtgcacaaccgggtgcagaacatcgagcggatt
gcgaagcgggtgatggagctcgcgcccggcgcgcgggtggcgatcgggcacggtcagatg
ccggaggagcagctggagcgggtgatgctggagttccaggccggggagcacgatgtgctg
gtctgcacgacgatcatcgagagcgggctggacatcccgaacgcgaacaccatcatcatc
aacgaggcgaaccggctggggctggcgcagctgtaccagctccggggccgggtggggcgg
tcggcgaaccgcgcgtacgcctacctgctgtacgacaaggaccgcgcgctgagcgaggcg
gcgcagaagcggctggaagcgattttcgaggcctcggagctgggggccggcttccagctg
gcgctgcgcgacctcgaaatccgcggcgccgggaacgtgctcgggaccgaacagagcggg
cacatcgcggaggtcgggttcgagctgtacaccaaactggtggcggaggcggtggcggcg
ctgaagcggggcatgggcgaggagctgccgcgggcggccgagccggagccgccgccgcca
gtggtggacctgccggtgagcgcgcacatcccggagagctacgtcggcgacatccacgcg
cggctgaacctgtatcagcggattgcgcatctcgggacggtcgaagcggtggcggagatg
cacgaggagctgcgggaccggttcgggccggttccgctggcagtcgagaacctgctctac
gtggcgctggtgcggaacctcgcgaagcgggcgggcatcgaggcgatcaagaccgacgag
cagatgttccacctgtacgtgcggggcgggacgacgccggagctgcgggagcgggtggcg
cggctcgggctgggggagcgggtggcgcggctcgggctgggggagctggtgctcaccggg
ccgaagcaggtgcgcatcgaccgggtgggcgccggcgagggctggatgccgctgctcgtg
cgggtccttcgggcgatgggcggagggcggccggcagcggaaagggcgggaaacgagcga
gtgtga
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