Tannerella forsythia: BFO_0251
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Entry
BFO_0251 CDS
T01682
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tfo
Tannerella forsythia
Pathway
tfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BFO_0251 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfo03400
]
BFO_0251 (mfd)
Enzymes [BR:
tfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFO_0251 (mfd)
DNA repair and recombination proteins [BR:
tfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BFO_0251 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
Gp7_helical
Leader_CPA1
Motif
Other DBs
NCBI-ProteinID:
AEW21592
UniProt:
G8UJ21
LinkDB
All DBs
Position
complement(280640..283987)
Genome browser
AA seq
1115 aa
AA seq
DB search
MDIKELLSVYAAHPQINAIGSLSGRDEARSVLLTGLNGSGGAVAIASLFRQRGGCFLCLM
NDLEEAGYFYNDLMQLTGGKQVYFFPSAYHRHIKYGHTDAAAEILRTEVLSMLQADEPSF
IIVSYPDAVAEKVLSKSVLRENTLMIHAGEKLDPIFVADVLDTYHFEQTDYVYEPGQYAI
RGSIMDIFSFSNEYPYRVDFFGNEVDSIRAFDVETQLSKEKLNEIRIIPEISRYDTANHQ
LAELLPAGATLVTHDMEWCRERIDSLWEEEPVNKDDEGFADREAMRRKLVRADDFVQATA
PLMHIRFHARPNDASAVLRIDTSPQPLFQKNFERVSEAFKQYIADGYTIYLLSDSEKQIE
RIRAIFEDRGETIAFTAVNRALHEGFIDHSLRCCFLTDHQIFGRFHKYNLKSDKARSGKI
VLSLKELSQFTSGDYIVHIDHGVGQFGGLVRTEVNGRIQEAVKLIYRNNDILFVSIHALH
KLSKYKGKDGEAPALNKLGSGAWEKMKDRTKKKVKDIARDLIKLYAQRRQEKGYAFGPDS
FMQDELEAGFIYEDTPDQMRATADVKADMERERPMDRLICGDVGFGKTEVAIRAAFKAVA
DNKQVAVLVPTTVLAFQHYQTFSRRLKDFPCTIDYISRARTTGEIKKTLARLASGELNIL
IGTHRLVSKDVKFKDLGLLIIDEEQKFGVSVKEKLRQLRTNVDTLTLTATPIPRTLQFSL
MGARDLSNITTPPPNRYPIQTEIERFHADIIREAIEFEMSRNGQTFIINNRIQNIYEIEA
LVRREIPGVRVAVGHGQMEPEKLERIILDFVNYEYDVLIATTIIENGIDVPNANTIIVNN
AHQFGLSELHQLRGRVGRGNRKAFCYLLAPPLSTLPPESRRRLQAIESFAELGSGMHIAM
QDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKADEFAELYASDPQENNGDRY
VRETFVESDLALMFPPTYIPNDSERVGIYRELDSIENEEKLAGFVSSLQDRFGRIPTEGE
ELIRVVGLRWTARRLGIEKIILKKGMMALYLPTDRDSPYYQSRAFGKLLGYVQRYPRICN
LREQNGRRSVIIKNVTNVAAAVRCLNEMESIVPEE
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggatattaaagaactactctctgtttacgctgctcatccgcaaattaacgctatcgga
tcactgtcgggccgggacgaagcgcggagcgttctgcttaccggattgaacggttcgggg
ggagccgtagcgatcgcttcactcttcaggcagagaggcggttgcttcctgtgcctgatg
aatgacctcgaagaggccggatacttttataacgacctgatgcaactcacgggagggaag
caggtgtatttctttccatcggcttatcaccggcatattaaatacggtcatacggatgcg
gcggccgagattttgcgcaccgaggtgctgagcatgcttcaggcagacgaaccgtcgttt
atcatcgtttcctatccggatgcggtagccgagaaagtactgtcgaaaagtgtccttcga
gagaataccctgatgattcatgccggtgaaaagctggacccgatttttgtggccgatgtg
ctcgatacgtatcacttcgagcagaccgattatgtgtacgaaccgggacaatatgcgatt
cgtggcagtatcatggatatcttttcattttcgaacgaatatccgtaccgtgtcgatttc
ttcgggaacgaagtcgattcgatacgggcgttcgatgtggaaacccaactgtcgaaggag
aaactgaatgagatacggattattcccgaaataagccgctacgacacggccaaccatcag
ctggccgagttgttgcctgccggcgctacgcttgtgacgcatgatatggagtggtgtcgt
gaacgtatcgacagcctttgggaagaagagcctgtcaacaaagacgatgaagggtttgcc
gatcgcgaggcgatgcgtcggaaacttgtacgggccgacgatttcgtgcaagcaacagcg
cctctgatgcatatccgttttcatgcccggccgaacgacgcatctgcagtcctgcgtatc
gacacttcgccgcagccgctttttcaaaagaatttcgagcgcgtcagcgaagcgttcaaa
caatatattgccgatggatatacgatctatctgcttagcgacagtgagaaacagatcgaa
cgcatccgcgccatttttgaagaccgtggcgaaacgattgctttcaccgcggttaaccgt
gcgttgcacgaaggttttatagaccattcgttacgctgctgcttcctgaccgatcatcag
attttcggacggttccataagtacaacctcaagagcgacaaggcgcgtagcgggaaaatc
gtcctctcgctcaaagaactgagccagttcacttccggcgactatatcgtgcatatcgat
catggggtcggacagtttggcggactcgtgcgcaccgaggtgaatggtaggatacaggaa
gccgtcaagctgatttaccgtaataacgatatcctcttcgtcagcattcatgcgcttcac
aaactgtcgaaatacaaaggaaaagacggcgaagcgccggcactgaacaagctgggcagc
ggtgcatgggaaaagatgaaagaccgcacgaagaagaaagtcaaagatatcgcccgcgac
ttgatcaaactctatgcgcaacgtcgacaggagaaaggctatgcgttcggtcctgacagc
ttcatgcaggatgagcttgaagccgggtttatctacgaagatacgcccgatcagatgagg
gcgacggccgacgtcaaagccgatatggagcgcgaacggccgatggaccggctgatttgc
ggcgatgtcggtttcggcaagacggaggtcgcgatccgtgcggccttcaaagccgttgca
gacaataagcaggtggctgtgctcgtgcctacgacggtgctggcttttcagcactatcag
acgttcagccggcgactgaaggattttccctgcaccatcgattatatcagtcgtgcacgg
acgaccggcgagattaaaaagacgctggcccggctggcgtcgggcgagttgaatatcctt
atcggcacgcaccggttagtgagcaaagatgttaagttcaaagacctcgggctgctgatt
atcgatgaggagcaaaagttcggcgtgtcggtcaaagagaagctgcgccagctgcgaacg
aatgtcgacacgctcaccctcacggccacgcccattccccgtacacttcagttctcgctt
atgggggcgcgcgacctgagcaatatcacgacccctccgccgaaccgttacccgattcag
acggagatcgaacgttttcatgcggacatcatccgcgaggcgatcgagtttgaaatgagt
cgcaacggacagacgttcatcatcaataaccgcatccagaacatctatgagattgaggcg
cttgtacgccgcgaaatacccggcgtgcgtgtggctgtcggacacggacagatggaaccc
gaaaagctggaacggatcattctcgatttcgtaaattacgagtacgacgtgctgatcgcc
acgactatcatcgagaatggcatcgacgtgccgaacgccaatacgatcatcgtcaataat
gcccatcagttcgggctttcggagctgcatcagttgcgcggacgtgtggggcgagggaat
cgcaaggcgttctgttacctgcttgctcctccgctctcaacgctgcctcccgagtcgcgc
cgccgcctgcaggccatcgaaagcttcgccgagctgggaagcggcatgcacatcgccatg
caagacctcgacatccgcggggcagggaatatgctgggggccgaacagagcggctttatc
gccgatctgggctatgagacgtatcagaagattctggaagaagccgtcgacgagctgaag
gcggatgagtttgctgagttgtatgcgtccgaccctcaggaaaacaacggcgaccggtat
gttcgtgaaacgtttgtcgagagtgatctcgccctgatgtttccgccgacgtatattccc
aacgactcggaacgcgtcggtatttaccgcgagctcgactcgatcgagaacgaggaaaaa
ctggccggttttgtctcttcgctgcaagaccgcttcggacggataccgaccgaaggcgag
gaactgatacgtgttgtcgggctgcgatggacagcccgtcgattggggatcgagaaaatc
atcctgaaaaagggcatgatggcgctctatctgccgaccgacagggacagtccttactac
caaagtcgtgcattcggtaagctgttaggctacgtgcaacgctatccgcgtatatgcaac
ctgcgcgaacaaaacgggagaaggagcgtgatcatcaaaaacgttacgaacgtggccgct
gccgtccgatgcctgaacgagatggaaagcatcgtgcctgaagaatga
DBGET
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