Takifugu flavidus (sansaifugu): 130522964
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Entry
130522964 CDS
T09160
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130522964 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfs03400
]
130522964 (lig4)
Enzymes [BR:
tfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130522964 (lig4)
DNA repair and recombination proteins [BR:
tfs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130522964 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130522964
NCBI-ProteinID:
XP_056883859
LinkDB
All DBs
Position
3:13931191..13936957
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AA seq
908 aa
AA seq
DB search
MEGTSRSDAAGEPSVAAQVPFVHLCTTLEKIQKAKLRPDKSKILGDFIGSWRKFHSALHK
ESKTTDSFYPAMRLFVPQFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYRAPT
TSQGDAGDFASVAYFVLKKRCTSQGNLSVQEVNDFLDSVAINNASKKKDLVKKSLLHLIT
QSSALEQKWLVRMILKDMKLGVSKETVLQVFHPDAPDLYNVNTDLNKVCQQLHDPSVSLS
EVSIELFSAFKPMLAAVANIHNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNAF
EYTQQFGGSPLQGSLTPYIHNVFNSHVVNCILDGEMMAYNPTTETLTQKGSKFDIKRLMD
DSELQTCFCVFDVLLVNDQKLGKEPLKKRYETLQTVFTPVKGRIHLVSKTDARRMQEVVN
ALNEAIDNREEGIMVKDPSSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRR
GGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYELGLKLAKHWKVFRKSDPPA
SILCAAEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTDCTLRFPRIEKIREDKEWHECMTL
AELDQFRSKASGKLASRHLHIDDDPQKKKRRVPVKPKKVVGTLEHFKAQDLSGVKKETDM
FEDVEFCILNGTEDHPKSELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLILSDQH
DVVWAAWLLECIDQKDVVPWQPRHMIHMSPSTREHFAKEYDAYGDSYFVDTDEQQLREVF
GRIRSSNVPAAVDVCQVEQRCGWEDLPTSLFRPFTVYLDAYSDVGDAESAVSASCLDIRA
LEFRFHGGTVVRRLEEGVSHVVVEEETRLLGLRTARRSFRKKFKIVKDSWVTDSIKAGYL
MDDTDYLV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacgtccagaagtgatgctgctggtgagccgtctgttgctgctcaggttcca
tttgttcacctgtgcaccactttagagaaaatccagaaagccaagctccggccagacaag
tccaagattttaggagatttcattggatcatggaggaagtttcattctgccctccacaaa
gaatccaaaacaacagactctttctacccagctatgcgcctctttgtcccccaatttgag
cgagagcggatggcatatggtattaaagagagtatgttagcgaaactctacattgatgtg
ttaggcctcccaaagaatggccctgaagccagtaagctgttgaactaccgcgcaccgact
acaagtcaaggagacgctggagactttgccagtgtggcatactttgtcctaaagaaacgg
tgcaccagtcaggggaacctgagtgtccaagaagtgaatgacttcttggactctgtggca
attaacaatgcaagcaagaagaaggatcttgtaaaaaagagtctgttgcacctcatcacc
cagagttcagctctagagcaaaaatggctcgtaagaatgattctgaaggacatgaagctc
ggggttagcaaggaaactgtcctccaagtcttccacccagatgcccctgacctctacaat
gtcaacactgatttgaacaaagtgtgtcagcagctccatgacccctccgtatcccttagc
gaggtctctattgaactcttctcagcctttaagcccatgttggctgctgtggcaaatatc
cacaatgtggaaaagcagatgggaaacagccctttttacattcagaccaagctggacggg
gagcgcatccagttgcacaaagatggggacgtgtacaaatacttcagccggaacgcgttt
gagtacacgcaacagttcggaggatctcctctgcagggctcactcacaccttatatccat
aatgtctttaacagccacgtggtcaactgtatactggatggagaaatgatggcgtacaac
ccaaccacagagactttgacgcagaaagggagcaaatttgacatcaagaggctcatggat
gactctgagttgcagacatgcttctgcgtctttgacgtgttgctcgtcaatgaccagaag
ctcggcaaggagcctttaaagaagcgttacgagacacttcagacagttttcacaccagtc
aaaggtagaatccacctggtgtcaaagacggatgccaggagaatgcaggaggtggtgaac
gccctgaatgaggccattgacaaccgagaggagggcatcatggtgaaggatccttcatcc
atttacaaacctgacaaacgtggggagggctggctgaaaataaagccagagtacgtggat
ggcctgatggacgagcttgacctgctgattgttggtggctactgggggaaagggagacgt
ggagggatgatgtctcacttcttgtgtgctgttgccgaggctccaaaacctggcgagaag
ccctctgttttccacaccctctgccgcatcggctctggctacaccatgaaagagttgtat
gaactcggtttaaaactggccaaacactggaaagtcttccggaaaagcgacccgccggca
tccattttgtgcgcagcggaaaagccagaagtctacatcgagccgtgcaactccgtcatt
attcaggtgaaggcagctgaaatcgttggcagcgacatgtataaaaccgactgcaccttg
cgcttccccaggatcgagaagatccgggaggacaaggaatggcatgagtgcatgactctg
gccgagctggaccagttccgcagcaaggcatcggggaaactggcctcgcggcacctacat
atcgacgacgatccccaaaagaaaaagcgcagggtgccggtcaagccaaagaaggtggtt
gggacattggaacactttaaggcccaagatctctccggagttaagaaggagaccgacatg
tttgaggatgtggagttctgcatcctgaacggcaccgaggatcaccccaagtctgagctg
gaaaagggtgtagccaggtgtggaggcattgtggtccaaaacccaggacgggacacctac
tgcgtgattgctggggttgagaatatgcgtgtgaagaacctgattctgtccgaccagcat
gacgtggtgtgggctgcctggctgctggagtgcatagaccagaaggatgtggtcccgtgg
cagccacgtcacatgatccacatgtccccctccacccgggagcactttgccaaggagtac
gacgcctacggcgacagctacttcgtggacactgacgagcagcagctgcgagaagtgttc
ggccggataaggagctcgaacgtgcccgccgctgttgacgtgtgccaggtggagcagcgc
tgcggctgggaggacctgcccaccagcctgttcagaccgttcacggtttacctggacgcg
tactctgacgtcggggatgccgagtcagccgtctctgcgtcctgcctggacatcagggcg
ctggagtttcgcttccacggagggacagtggtgcggaggttagaggagggggtctcgcac
gttgtcgttgaagaggagacgagacttctgggtctgagaaccgccaggcgcagcttccga
aagaaatttaagatcgtaaaagactcatgggtgacggattccattaaagcaggttatctt
atggacgacaccgactacttagtttga
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