Takifugu flavidus (sansaifugu): 130525763
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Entry
130525763 CDS
T09160
Symbol
skic3
Name
(RefSeq) LOW QUALITY PROTEIN: SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130525763 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130525763 (skic3)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130525763 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_11
TPR_12
TPR_8
TPR_17
TPR_16
TPR_9
TPR_6
ANAPC3
TPR_15
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
130525763
NCBI-ProteinID:
XP_056888865
LinkDB
All DBs
Position
5:997753..1008566
Genome browser
AA seq
1569 aa
AA seq
DB search
MSSKEVKTELKSAREAIKKKEFKEALKHCKAVLKLEKNNYNAWVFIGLAASELEQPDQAQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKDELPNVYQKLVDLYASSDKNKCYELIR
KLLDIYHSDKEYLKLAKLWLQLLHLKEEEAVERKELLQLWQEMAQLLLDCLNEEEQHGDI
QQHLITAFEKALSLMDAVPGEEHKKVSLDYIRCLSKLPTEEGRLKEACESMLALYPNQSY
PLEVLCSHYLNTGAQDEVAVSCFSRLLNLAPNSGLGHLGLGTKALHEGRFKDAIKELQQG
LKKMSLNTGWYSLAEAQFKTHKYSDSAVSCSQGLALCASEDQQQREKLLRLKLEALVGSG
GEEAASEAMETFSQLPGAKEDPVLLMLKGRAHLNMGHVDQALQVSSELMSSRPNLAQAFV
LRGLVQVAQGQQQLAEESFQKAISQSPDCGEYYFLLGKLYWDMGEATRNDRSKAYTHLIK
AAKLDPNAGRAFHYLGRYYQEVVCDHGRARGCYKKAFDLDNDDVESGAAAVDLSMKDDDM
DSALEMLQSVIEKATPGSGKWAWLRRGLYYLKIGQHQKAIADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLHPGSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAVDLIQQAIVNLFRAVELRPDLSCLWKLLGDACT
AVSTVSPNRAQLAIPAALAGLVPDAQNQLLNQAQALKVGERCYVRALRLMPEVPSLWHDL
GLNYYHQSRLPCVSGGEENAPCLLLEKAQECLKKAVMLDSASHNHWNALGVISMSKGLEN
FALAQHCFIKSIEVEQNNVVAWTNIGTLYLKKENIELAHKAFKVAQSLEPLYVNCWIGQA
LIAEKVGNYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAV
SAAQVALTKYTERIQCDPAAFIMLGYLNEHLHLKRQALHGYQRAVELLQSSSREELVFAL
GNYGRALSTLGQWDKAACVYKSTQLQELSDVVGLALAYCRAGRLTESRDAYDSALALAAT
EKEKAYILTAQALLQHRQGNLDLAKTLLFKCSMLKEPISESLLCLCALGLVHSDATLASA
ALTELLKQGAPSGSVVEQRCLLTCALLALQRNYSAVQREXSRAVHSNPGNASLWALLSRV
IPQYYPRKANGGATAGHVACLSSMTQGKRALLYSGVNQLANGRHSGEDSHNNALKMMQRA
VLLCPDDPATWAGLMAACHTENTCCYLSGSAPRRQGMEQSLMAIVSEKVCDVEEIERPLA
QSLEGWVLQQAVAGLMLAGQLEQAEALCSQVLSVSPEHPGVLLLLRQVQCQQLLGAADHA
VLPDGVLEQLNNTVMMNPTNLGAWHWLAEVYRGQGLLLQAVMAYRQSLQLASQLGIHNSQ
FASLLRLALLALRPCMAGVQGNQWADLILEATAEVLKLGPAPVALLFQALLQFATKMPAR
ETRRSLERLTCVSSQDFPVTVVQVARWYLLRHLHAKGDEELIKVHLQHAKESGDERLLTF
HSLLNKSQL
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtaaagaagtgaaaactgaactgaaaagcgccagagaggctattaaaaaaaaa
gaattcaaggaggctctaaagcactgtaaggctgttctaaaactcgagaagaacaactat
aatgcctgggtgttcattggccttgcagccagtgagttggagcagccagaccaggctcag
acagcctataaaaaagcagttgagctggagcctgagcagcttctagcatggcagggtttg
gcaaatctttatgagaagactgatcagtgggattttaaagatgaactacctaatgtctat
cagaagcttgttgacctgtatgcaagctctgacaaaaacaaatgttatgagctgatcaga
aagctgttggacatctatcactctgacaaagagtatttaaagttggcaaagctttggctg
cagttgcttcatctgaaggaggaagaggctgtggagaggaaagagttactgcagttatgg
caagagatggcccagctcctcttagactgccttaatgaggaggagcagcacggggacatc
cagcagcacttaatcacagcgtttgaaaaagccttgagtctaatggatgctgtaccaggg
gaggaacacaagaaggtttcacttgactacattagatgtctctccaaacttccaacagag
gaaggcagactgaaagaggcatgtgagtccatgctggccctgtatcccaaccaaagttat
ccacttgaagttctctgttctcactatctcaacacaggtgctcaggatgaggttgcagtc
agctgtttttcacggctcctgaatcttgcccctaacagtggactgggccatctgggtctg
ggcaccaaagccctgcatgaagggaggtttaaagatgccattaaggagctccaacaaggt
ttgaagaaaatgagcctgaataccggatggtacagtctcgccgaagctcagttcaaaacc
cacaaatactcagacagtgctgtgtcatgctctcaaggtctggcactttgtgcttctgag
gaccagcaacaaagagaaaaactgctccgactgaagctggaagcgttagttgggagtgga
ggagaggaagctgccagtgaggccatggagacattttcacagctcccaggtgctaaagaa
gaccccgttcttttaatgctgaaaggccgtgcacacctcaacatgggacacgttgaccaa
gctttacaggtgtcatcagagttgatgtcctcccgtcctaatctggcccaggccttcgta
ctgagaggactggtccaggtcgcacagggacagcagcagctggcggaagagagtttccag
aaggcaattagccagagtccagactgtggagagtattatttcctgctagggaaactttat
tgggacatgggagaggcgactcgtaatgacaggagcaaagcctacacacatctaatcaag
gctgcaaagttggacccaaacgctggtcgtgcgttccactacctgggacgttattaccag
gaggtggtgtgtgatcacgggcgcgcacgaggctgctacaagaaagcttttgacttggac
aacgatgatgtggagtctggggcggctgcagtggatctcagtatgaaagacgatgatatg
gacagtgccttagaaatgctccagtcagtcatcgagaaagccactccaggatcaggaaaa
tgggcttggctgagaagaggactttactatctaaagattggacagcatcaaaaagctata
gctgatctgcaggccgctctgagggcggaccctgaagactgggtctgttgggagtgttta
ggcgaggcctacctgaaccgcagaagcttcacggcagctttgaaggcctttgggaaggcc
catcagctgcatcctggttctatctacagcgtctaccaggccgccgccatcaaacagacc
cttggcaagttcaaagaagcagtcgctgaatatttgcaaatcacagcccaacaggattat
gttcccgctcttaaaggtctcggggagtgccagttgtccctcgctaagagtctgatggaa
gactgtagagatgggggagctgtggaccttattcagcaagcaatcgtaaaccttttcaga
gctgtggagctgcgtccagacctgagctgtttgtggaaactgctgggagatgcttgcaca
gcagttagcactgtgtcgccaaacagagcccagctagctatacccgctgctttggccggc
ttagtccctgacgctcagaatcagcttttgaaccaggcccaggcacttaaagtcggagag
agatgttatgtccgggccttgaggctgatgcctgaagtccccagtctgtggcatgacctc
ggactcaactattaccaccagtcccgcctgccctgcgtctcaggcggggaggagaacgcc
ccgtgcctcctgctagaaaaggcccaggagtgtctaaaaaaggccgtgatgttggacagt
gcaagtcacaaccactggaatgccttgggagtgatttcaatgagcaaaggtttagagaac
tttgctctcgctcagcattgcttcatcaaatcaattgaagtagagcaaaataatgttgtt
gcttggacaaatatcggtaccctctatctgaagaaggagaacattgagctggcacacaag
gctttcaaggtcgctcagtccctggagcctctttacgtcaactgttggattggacaggcc
ctgatagcagagaaggttggaaactatgacaccatggatctcttcagacacaccacagag
ctcagcacacatatggagggggtgaagggttatgcctactgggtgtgttccaccctgttg
gataagagcaacagagactctgaactgtaccgctacaacatagtccagatgaacgccgtc
tccgcagcacaggtggccctcaccaagtacacggaaaggatccagtgtgaccctgctgcc
ttcatcatgcttggctatttgaacgaacatctgcatttgaagcggcaggctttacatggt
taccaaagagctgtggagctgcttcagtcctcttcaagagaggagctggtgtttgctctg
ggcaactatggccgtgctttaagcactttgggccagtgggacaaagcagcgtgtgtctat
aaatccacccagcttcaggagctcagcgacgtggtcgggctggctctggcctactgcagg
gctggacgcctcacagagagcagagatgcctatgacagcgccttggctttggctgccact
gagaaggagaaggcctacatcctgacggcccaggccctgcttcagcaccggcaggggaac
ctagacttggccaaaacgctcctctttaaatgctcaatgctgaaggagccgatttccgag
tctctcctgtgtttatgtgcgctgggtttagtccacagtgatgctacattagcatccgct
gccctcacggagctgctcaagcaaggtgccccctctggtagcgttgtcgagcagcggtgc
cttctgacctgtgccttgctggccctgcagcgcaactacagcgcagtgcaaagagagngc
tcccgagccgtgcacagcaatcctggaaacgcatctttgtgggctttgctgtccagagtg
ataccgcagtactaccccaggaaggccaatggtggagcaacagctggtcatgtagcctgt
ctgtccagtatgacccagggaaagagggcgctgttgtacagtggcgtgaaccagctggcg
aatgggagacactctggagaggacagtcacaacaatgcactgaagatgatgcagagggcc
gtacttctctgtcctgacgatccagcaacatgggcgggattaatggctgcctgtcacaca
gaaaacacttgctgttatctgtcaggttctgctccaaggagacaaggaatggagcagtct
ctcatggcaattgtgtctgagaaagtgtgtgatgtagaggaaattgagcgacctctggct
cagtctctggagggatgggtgctacaacaggcagtggctggtctcatgttggcaggacag
ctagaacaagctgaagctctgtgctctcaggtcctgagtgtttctccagaacatccagga
gtgctgctgctgctgaggcaggttcagtgtcagcagctcctgggggccgctgaccacgcc
gtcctcccagatggcgttttggagcaactgaacaacacggtgatgatgaaccccaccaac
ctcggtgcgtggcactggctggctgaggtgtaccgcggccagggcctgctgctccaggcc
gtcatggcgtaccggcagagcctgcagctggcctcacaactcggcatccacaacagccag
ttcgcaagcctcctccgcctggccctgctggccttaaggccctgcatggcaggtgtccaa
ggcaaccagtgggcagacttgatcttagaagccaccgctgaggtcttgaagctgggtcca
gctcctgtggcgctgcttttccaggccctgctgcagtttgctaccaaaatgcctgcgaga
gaaacacggcgttccctggagaggctgacgtgcgtctcctctcaagacttcccagtcaca
gtggtgcaggtggccaggtggtaccttctcaggcatttacatgctaaaggggacgaggaa
ctgataaaggtccatttgcaacatgcgaaagagagtggagatgaaaggctgctgacattt
cattcattgctcaacaaatcccagctgtaa
DBGET
integrated database retrieval system
