Takifugu flavidus (sansaifugu): 130538378
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Entry
130538378 CDS
T09160
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03013
Nucleocytoplasmic transport
tfs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130538378 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
130538378 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130538378 (thoc1)
03041 Spliceosome [BR:
tfs03041
]
130538378 (thoc1)
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130538378 (thoc1)
Spliceosome [BR:
tfs03041
]
Complex C
Other components
EJC/TREX
130538378 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130538378 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
130538378
NCBI-ProteinID:
XP_056911838
LinkDB
All DBs
Position
15:complement(12827251..12832268)
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AA seq
654 aa
AA seq
DB search
MSPSLFNFVEAKDKFTTSAKHALTGKTGKHLVNAFNQIPGSETEKKTTLDQALRGVLGDQ
IVEQKSSCDDYLSLIYLSIDSVTEGICSATTPFVLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKNTEEKEDGMEVEEGEMGEEDAPAPCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKFSWMTFVKYSDETLAVFKSYKLDDMQASKRKLEDLRASGGDHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSGSVLNDDQAAWIEETSKLA
YQLLREIPPDGDKFATMVEHILGTEENWNSWKNEGCPSFVKERTVDDKPKRPARKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNHDNMDACKSESREFVPSLDDFFSEAIEQADPANMV
EDEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPCE
EIKTGEEDDDDNGDNLLKDSNDSPSMQNKMVSNQQMDDVAAKLGARWKTLATHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGNQATVENLAAALNVAGFSQMAETLSEG
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgtccttatttaattttgttgaagctaaagataaattcacgacgtctgctaaa
catgccctcactggaaaaaccggaaaacacctggtaaatgcttttaaccagattcctggg
agcgagacagaaaagaagaccacccttgaccaggcactgagaggggttctcggcgatcag
attgttgagcagaagtcgagctgcgatgactacttgtccctcatctacctgagcatcgat
tctgtaacagaagggatctgctctgctacgacgcctttcgtcctgttgggagacgtcctc
gactgtctgcctcttgaccagtgtgacaaaatattctcttttgtcgaggaaaatgtatcc
acctggaaatcgaactcattttacactgctgggaaaaactacttgttgaggatgtgcaat
gatctgttacggaggctgtccaaatcccagaacactgtattctgcgggcgaatccagctt
ttcttggcgcgtcttttcccgctgtctgaaaagtcaggtctcaatctgcagagccagttt
aacctggacaatatcacagtgttcaacaagaacgagcaggagagcactctaggccagaag
aacacagaagaaaaagaggatgggatggaggtagaggagggggaaatgggggaggaagat
gcccctgccccttgttccatccccatcgactacaacttgtacaggaaattctggacgctg
caggactacttcaggaaccccgtgcagtgttacgataaattctcttggatgactttcgtt
aagtattcagatgaaaccttggcggttttcaaaagctacaaactggacgacatgcaggcg
tctaagaggaagctggaggacctgagagcgtctggaggggaccacgtttactttgccaag
tttttaacaagtgagaagctgatggacttgcagctgagcgacagcaacttcaggcggcac
attctgctgcagtacctcatcctgttccagtacctgaagggtcaagtcaagtttaaaagc
tccggctctgttctgaatgatgatcaggctgcttggattgaagagacttcgaaactggct
tatcagcttctgcgggagattcctcctgatggagacaagtttgccaccatggtggagcat
attcttggcaccgaggagaactggaatagttggaaaaacgaaggctgcccgagctttgtg
aaagaaaggacagtggatgacaaacccaaaagacccgccaggaaaagacaagctccagag
gacttcctgggaaaagggccagaccgcaagatatttatgggaaatgatgaattaactcga
ctttggaacctgaaccacgacaacatggacgcctgcaagtctgagtccagggaatttgtt
ccttcccttgacgacttcttctcagaggccatcgagcaggccgaccctgctaacatggtg
gaggacgagtataaggtcgtgcggaacccaaactatggctggcgagctctgaggctgctt
tccaggagaagtccgcatttctttcagccaaccaatcagaagttcaagagcctggcagat
tacctggacagcatggttagcaaactagccaaagagctgccgaaggacattccctgtgaa
gagatcaagacaggagaggaggacgatgatgataacggggacaatctcctcaaagacagc
aacgacagtcccagcatgcagaacaagatggtgtccaaccagcagatggacgacgtggca
gccaagctgggcgctcggtggaagacgctggccactcatctggagatgaaggcggccgaa
ctgagggagatcgagacggacagtgaagatgtggacatgcaggccaaactgctgctggtg
gcctggcaggacagagaggggaaccaggccaccgtggagaacctggcggcggctctcaac
gtcgccggattctcccagatggcagaaaccctcagcgagggttaa
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