Entry
Name
(RefSeq) DNA ligase 1, putative
KO
Organism
Pathway
Brite
KEGG Orthology (KO) [BR:tgo00001 ]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TGME49_208580
03410 Base excision repair
TGME49_208580
03420 Nucleotide excision repair
TGME49_208580
03430 Mismatch repair
TGME49_208580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:tgo03032 ]
TGME49_208580
03400 DNA repair and recombination proteins [BR:tgo03400 ]
TGME49_208580
Enzymes [BR:tgo01000 ]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TGME49_208580
6.5.1.6 DNA ligase (ATP or NAD+)
TGME49_208580
6.5.1.7 DNA ligase (ATP, ADP or GTP)
TGME49_208580
DNA replication proteins [BR:tgo03032 ]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
TGME49_208580
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
TGME49_208580
DNA repair and recombination proteins [BR:tgo03400 ]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
TGME49_208580
NER (nucleotide excision repair)
Other NER factors
TGME49_208580
MMR (mismatch excision repair)
Other MMR factors
TGME49_208580
BRITE hierarchy
SSDB
Ortholog Paralog Gene cluster GFIT
Motif
Motif
Other DBs
LinkDB
All DBs
Position
Ib:complement(join(793117..793320,793894..794001,794584..794769,795437..795591,796039..796518,796543..797110,797503..797771,798098..798363,799030..799510,800326..800439,800695..801167,801825..802516))
Genome browser
AA seq
1331 aa AA seq DB search
MTGNSSSSSLLLPDGLCLLFFLFLACPLSLVPSLLAFFLAAWIGVVLTSTAPFLRAASLP
PSRLSSLHDSLRVAYGLPGLFRTFLQPSEKQLRRRRRTTASIRRRLYFFLFSSVVVLLTS
PPLPAAALPVPAFEVPANPLVGRVSSRAVPFASTPASLPSSALLAPRRPSFLLSPFPAPL
HTSSQSAPAVRLCESPSSSSSSSSRRLSPLRPAITMKKAAAVPAKKQTSILSFLSRKDDT
RAPSSTKTGDSRADATANLLAGLAPEESAVPLRKRQLPASAAAFSPSAKKRREGGCEREE
TERAEVPQEDARREAVASLKDQEACLVEDAPEVIGSDGRRRGRLRKELERDAENDVNEGN
GQSNAATENVETGVHAEAQADRHTHTNEDAEDDPVSEAVSDRESIDSDSSVASSRDASHP
RGDVKKVSASSAAGRRALEMLQKKKRSPGSEKRKAALFSDSEDAAAGSMSEDEGRHEASK
AKKSVLEALAERKGESREETANEETRKEKKREAPQEKKSTTRKKKSEDDEQLKTGTLFAV
RVLGKDSSADLSSPLFDPAAVPLASVSAKKSERSSKKEPVDDSPPILFEALVNAFDKIEQ
MKASGTGSNKKQTVVLTNLFRLLLFYAPKTLHKAIYICLNKVAPDYLGQEVGVGESLILR
AMAETYGRTEAHLKKELQHIEDLGKIAEQSSCKTRTLFPPPRLTIDGVFDQVKAISQCAG
KDSQVHKRELLKRLLVGGKGSEPKYIIRFLQQRMRTGASTATVYQALAFACFLTHNARNG
RPAIGDTRRYVPSPEETSKDPSSSPSSPSSSPSSSSSSSSSSSSSSSSSSAPLPSSMSAV
ELESHLSRMEQSVRRALCEVPNVEVVVGHLLQGADAEALSSLCVATPGIPLQPMLARPTR
GFEEVMERLKQTEFTCEFKYDGERIQLHLVSEQAAKRTPGLCPSSTGASASSSAGASASS
SPPASASSACGPLRKISPTRVRLFSRNLEEITQKYPDVIDMFLASLQPTTEECILDGEVV
AYDEENRTILPFQTLTRRKRKGVEKDGIEVRVALFLFDCMRLNGECLLGKTLEARREKMR
QAIDFERSPLVQQAAYKDIRGAQDFEDFLTEAIEGNCEGLMVKTLRENATYEPSKRSLNW
LKVKKDYVDGLTDSVDLVPIGACYGKGKRSGTFGTYLLAVYNPADETFQTVCKAATGFSE
EALQQHHKALSDRIISHKKPYYDVSPKLEADVWFEACQVWECRAADLSISPVHTAGIGEK
SPDKGIGLRFPRFLRVREDKNPEQATTSTQIVEMYTNQFRQNKVHGGRTNAEREEEEVED
ESESEEQRKED
NT seq
3996 nt NT seq +upstream nt +downstream nt
atgaccggaaacagctcttcttcctctcttcttctccctgacggtctctgccttctcttc
tttctttttctcgcctgtccactgtctttggtgccctctctgctcgcgttcttccttgct
gcttggattggcgtcgtcttaacctcgacagctccctttcttcgagctgcctcacttcct
ccctctcgtctctccagtctccacgacagtctccgggtcgcctacggcttgcccggcctc
tttcggactttcttgcagccttccgagaaacaactgcgtcgccgaagaagaacgacggcg
tcaatccgccgccggctctatttcttcctcttctcgtccgtcgttgtcctgttgacttct
ccccctctcccggctgctgcactccccgttcctgctttcgaagtcccagcgaatcctctc
gtcggccgcgtttcttctcgcgctgttcccttcgcgtcgacgcctgcctccttgccgtcc
agcgctcttctggctcctcgacgtccgtccttcctcctctcgcccttccccgctcccctc
cacacctcctcccaatctgcacccgctgtgcggctctgcgaatccccttcttcttcttcc
tcttcttcttcgcgtcgcttgtctcctctccgccccgccatcaccatgaagaaggctgcg
gccgtccccgcaaagaagcaaacctccattctgagttttctcagccgcaaggacgacacc
cgcgcgccgtcgtccacgaagactggagactcgagagcagacgcgacggcgaatctgctt
gcaggccttgctccagaggagagtgcggtgcccctgcgaaagcggcagttgccggcgagc
gccgctgctttctctccgtcggccaagaaaagaagagaaggcggctgcgagcgcgaggag
acagaacgcgctgaagtccctcaggaagacgccagaagagaggcggtcgcgagcctgaag
gaccaagaggcttgcctggtggaagacgcgccggaggtgatcggcagcgacgggaggcgc
agaggacggctgaggaaagaactcgagagagacgcggaaaacgacgtcaacgaaggcaat
ggccagtcgaacgcagcgacagaaaacgtcgaaacgggcgtccacgctgaggcgcaggca
gaccgccacacacacacaaacgaagacgccgaggatgaccctgtcagcgaggcagtcagc
gaccgagagtcgatcgactctgactcttcagtggcgtcgtctcgcgatgcgtcgcacccc
cgaggggatgtaaagaaagtgtcggcgtcgtctgcggctgggcgtcgtgcgttggagatg
ctacagaagaagaagcgatcgcctggctctgagaagaggaaagcagcgctcttctccgac
agcgaggacgcggccgccggctcgatgtccgaggacgaggggcgccacgaagccagcaag
gccaagaagtccgttctggaagcgcttgcagagcgcaaaggagagtcgcgagaggagacc
gcgaacgaggaaacgaggaaggagaagaagcgcgaggctccccaagagaagaagagcacg
acgaggaagaagaaatccgaggacgacgaacagctgaaaactggcacactctttgccgtg
cgtgtcttggggaaggactcttccgccgacctctcctcgcctctcttcgaccctgcggct
gttcccctcgcgagcgtctctgccaagaagtcggagcgttcctcgaagaaggaacctgtc
gacgactcaccccccattctcttcgaggcactcgtgaacgcattcgataagatcgaacag
atgaaggcgagcgggacaggcagcaacaagaagcagacagttgtgctaacgaatctgttt
cgccttttgcttttctacgcgcccaagacgctccacaaagcgatctacatttgcctcaac
aaagtggcgcccgactacctggggcaggaagtcggcgtcggagagtcgctgatcctcagg
gcgatggcagagacctacggacgcacagaagcgcatctgaaaaaagagttgcaacacatt
gaggacttggggaagattgcggagcagagttcatgcaagacgcggactctcttccctcct
cctcgcctcacgattgacggcgtcttcgaccaggtgaaggcgatcagccagtgtgctggg
aaggacagccaggtgcataaacgcgagttgctgaagcgtctgctcgtcggaggaaaggga
tcggagccaaagtacatcattcgctttcttcaacaaagaatgcgcactggcgcctccact
gcgacagtttatcaggcacttgcctttgcatgcttcctcacgcataacgcccgcaacgga
cgccctgccatcggtgacacacgccgctacgttccttccccagaagaaaccagcaaagat
ccttcctcgtctccttcctctccttcctcgtctccttcctcgtcttcttcctcgtcttct
tcctcgtcttcctcgtcttcttcgtcttctgctccgttgccttcttcgatgagcgcggtc
gagctggagtctcacctgtcgcggatggagcagagcgtccgtcgagctctgtgcgaagtt
ccaaatgtggaggttgtggtggggcatctgctccagggggcagacgccgaggcactttcg
tcgctctgcgtagcgacacccggaattcccttgcagcccatgttggctcggccgacgcgc
ggattcgaggaagttatggagcgactgaagcagaccgaatttacgtgcgaattcaagtac
gacggcgaacgcattcagcttcacctagtcagcgaacaagcggcgaaacgaaccccgggg
ctgtgtccttcctcaacaggcgcttctgcttcttcctcggcaggcgcttctgcctcttcc
tctccaccggcgtctgcgtcttctgcctgtgggccgctgcggaagatctctccgactcgc
gtgcggttgttcagtcgcaacttggaggagatcacgcaaaagtatcccgacgtcatcgac
atgtttctcgcctctctccaaccgaccacggaggagtgcattctcgatggggaggtggtg
gcttacgacgaggagaaccggacgattctccccttccagactctcacaaggaggaagcga
aagggcgtcgaaaaagacggcatcgaagtgcgtgtggcgctcttcctctttgactgcatg
cgcctgaacggcgagtgtcttctgggcaagaccctcgaggcgcgccgcgaaaaaatgcgg
caagccatcgactttgaacgcagtcctctcgtccaacaggcggcctacaaggacatccgt
ggagcccaggacttcgaggacttcctcacggaagcaattgaaggcaactgcgaggggttg
atggtcaaaactctcagagaaaatgccacctacgaaccgtccaagcgctctcttaactgg
ctcaaggtgaagaaagactatgtcgacggactcacggactcggtggatctcgtccccatc
ggtgcgtgctacggaaaggggaagcgaagtggaactttcggcacctacttgctcgccgtg
tacaatcccgcagatgaaacgtttcagaccgtttgcaaagcagcaacgggtttcagcgag
gaggcgcttcaacagcaccacaaggctctgagtgaccgcatcatttcacacaaaaaacct
tactacgatgtgtctccgaagcttgaagcagatgtgtggtttgaggcctgccaggtttgg
gagtgccgagcagccgacttgtcaatttcccctgtccatacagctggaatcggagaaaag
tctcctgataagggtattggtctgcgcttcccgcgattcttgagagtcagagaagacaag
aaccccgaacaggcgacgacatcgacgcagattgtcgagatgtatacaaatcagtttcgg
cagaacaaagttcacggtggcagaaccaacgcagagagagaggaggaagaagtggaagac
gagagtgagtccgaggagcaaaggaaggaggattag