KEGG   Toxoplasma gondii: TGME49_208580
Entry
TGME49_208580     CDS       T01093                                 
Name
(RefSeq) DNA ligase 1, putative
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tgo  Toxoplasma gondii
Pathway
tgo03030  DNA replication
tgo03410  Base excision repair
tgo03420  Nucleotide excision repair
tgo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TGME49_208580
   03410 Base excision repair
    TGME49_208580
   03420 Nucleotide excision repair
    TGME49_208580
   03430 Mismatch repair
    TGME49_208580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tgo03032]
    TGME49_208580
   03400 DNA repair and recombination proteins [BR:tgo03400]
    TGME49_208580
Enzymes [BR:tgo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TGME49_208580
    6.5.1.6  DNA ligase (ATP or NAD+)
     TGME49_208580
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TGME49_208580
DNA replication proteins [BR:tgo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TGME49_208580
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TGME49_208580
DNA repair and recombination proteins [BR:tgo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TGME49_208580
   NER (nucleotide excision repair)
    Other NER factors
     TGME49_208580
   MMR (mismatch excision repair)
    Other MMR factors
     TGME49_208580
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C TEADIR3
Other DBs
NCBI-GeneID: 7896565
NCBI-ProteinID: XP_018638480
UniProt: S8GKM6
LinkDB
Position
Ib:complement(join(793117..793320,793894..794001,794584..794769,795437..795591,796039..796518,796543..797110,797503..797771,798098..798363,799030..799510,800326..800439,800695..801167,801825..802516))
AA seq 1331 aa
MTGNSSSSSLLLPDGLCLLFFLFLACPLSLVPSLLAFFLAAWIGVVLTSTAPFLRAASLP
PSRLSSLHDSLRVAYGLPGLFRTFLQPSEKQLRRRRRTTASIRRRLYFFLFSSVVVLLTS
PPLPAAALPVPAFEVPANPLVGRVSSRAVPFASTPASLPSSALLAPRRPSFLLSPFPAPL
HTSSQSAPAVRLCESPSSSSSSSSRRLSPLRPAITMKKAAAVPAKKQTSILSFLSRKDDT
RAPSSTKTGDSRADATANLLAGLAPEESAVPLRKRQLPASAAAFSPSAKKRREGGCEREE
TERAEVPQEDARREAVASLKDQEACLVEDAPEVIGSDGRRRGRLRKELERDAENDVNEGN
GQSNAATENVETGVHAEAQADRHTHTNEDAEDDPVSEAVSDRESIDSDSSVASSRDASHP
RGDVKKVSASSAAGRRALEMLQKKKRSPGSEKRKAALFSDSEDAAAGSMSEDEGRHEASK
AKKSVLEALAERKGESREETANEETRKEKKREAPQEKKSTTRKKKSEDDEQLKTGTLFAV
RVLGKDSSADLSSPLFDPAAVPLASVSAKKSERSSKKEPVDDSPPILFEALVNAFDKIEQ
MKASGTGSNKKQTVVLTNLFRLLLFYAPKTLHKAIYICLNKVAPDYLGQEVGVGESLILR
AMAETYGRTEAHLKKELQHIEDLGKIAEQSSCKTRTLFPPPRLTIDGVFDQVKAISQCAG
KDSQVHKRELLKRLLVGGKGSEPKYIIRFLQQRMRTGASTATVYQALAFACFLTHNARNG
RPAIGDTRRYVPSPEETSKDPSSSPSSPSSSPSSSSSSSSSSSSSSSSSSAPLPSSMSAV
ELESHLSRMEQSVRRALCEVPNVEVVVGHLLQGADAEALSSLCVATPGIPLQPMLARPTR
GFEEVMERLKQTEFTCEFKYDGERIQLHLVSEQAAKRTPGLCPSSTGASASSSAGASASS
SPPASASSACGPLRKISPTRVRLFSRNLEEITQKYPDVIDMFLASLQPTTEECILDGEVV
AYDEENRTILPFQTLTRRKRKGVEKDGIEVRVALFLFDCMRLNGECLLGKTLEARREKMR
QAIDFERSPLVQQAAYKDIRGAQDFEDFLTEAIEGNCEGLMVKTLRENATYEPSKRSLNW
LKVKKDYVDGLTDSVDLVPIGACYGKGKRSGTFGTYLLAVYNPADETFQTVCKAATGFSE
EALQQHHKALSDRIISHKKPYYDVSPKLEADVWFEACQVWECRAADLSISPVHTAGIGEK
SPDKGIGLRFPRFLRVREDKNPEQATTSTQIVEMYTNQFRQNKVHGGRTNAEREEEEVED
ESESEEQRKED
NT seq 3996 nt   +upstreamnt  +downstreamnt
atgaccggaaacagctcttcttcctctcttcttctccctgacggtctctgccttctcttc
tttctttttctcgcctgtccactgtctttggtgccctctctgctcgcgttcttccttgct
gcttggattggcgtcgtcttaacctcgacagctccctttcttcgagctgcctcacttcct
ccctctcgtctctccagtctccacgacagtctccgggtcgcctacggcttgcccggcctc
tttcggactttcttgcagccttccgagaaacaactgcgtcgccgaagaagaacgacggcg
tcaatccgccgccggctctatttcttcctcttctcgtccgtcgttgtcctgttgacttct
ccccctctcccggctgctgcactccccgttcctgctttcgaagtcccagcgaatcctctc
gtcggccgcgtttcttctcgcgctgttcccttcgcgtcgacgcctgcctccttgccgtcc
agcgctcttctggctcctcgacgtccgtccttcctcctctcgcccttccccgctcccctc
cacacctcctcccaatctgcacccgctgtgcggctctgcgaatccccttcttcttcttcc
tcttcttcttcgcgtcgcttgtctcctctccgccccgccatcaccatgaagaaggctgcg
gccgtccccgcaaagaagcaaacctccattctgagttttctcagccgcaaggacgacacc
cgcgcgccgtcgtccacgaagactggagactcgagagcagacgcgacggcgaatctgctt
gcaggccttgctccagaggagagtgcggtgcccctgcgaaagcggcagttgccggcgagc
gccgctgctttctctccgtcggccaagaaaagaagagaaggcggctgcgagcgcgaggag
acagaacgcgctgaagtccctcaggaagacgccagaagagaggcggtcgcgagcctgaag
gaccaagaggcttgcctggtggaagacgcgccggaggtgatcggcagcgacgggaggcgc
agaggacggctgaggaaagaactcgagagagacgcggaaaacgacgtcaacgaaggcaat
ggccagtcgaacgcagcgacagaaaacgtcgaaacgggcgtccacgctgaggcgcaggca
gaccgccacacacacacaaacgaagacgccgaggatgaccctgtcagcgaggcagtcagc
gaccgagagtcgatcgactctgactcttcagtggcgtcgtctcgcgatgcgtcgcacccc
cgaggggatgtaaagaaagtgtcggcgtcgtctgcggctgggcgtcgtgcgttggagatg
ctacagaagaagaagcgatcgcctggctctgagaagaggaaagcagcgctcttctccgac
agcgaggacgcggccgccggctcgatgtccgaggacgaggggcgccacgaagccagcaag
gccaagaagtccgttctggaagcgcttgcagagcgcaaaggagagtcgcgagaggagacc
gcgaacgaggaaacgaggaaggagaagaagcgcgaggctccccaagagaagaagagcacg
acgaggaagaagaaatccgaggacgacgaacagctgaaaactggcacactctttgccgtg
cgtgtcttggggaaggactcttccgccgacctctcctcgcctctcttcgaccctgcggct
gttcccctcgcgagcgtctctgccaagaagtcggagcgttcctcgaagaaggaacctgtc
gacgactcaccccccattctcttcgaggcactcgtgaacgcattcgataagatcgaacag
atgaaggcgagcgggacaggcagcaacaagaagcagacagttgtgctaacgaatctgttt
cgccttttgcttttctacgcgcccaagacgctccacaaagcgatctacatttgcctcaac
aaagtggcgcccgactacctggggcaggaagtcggcgtcggagagtcgctgatcctcagg
gcgatggcagagacctacggacgcacagaagcgcatctgaaaaaagagttgcaacacatt
gaggacttggggaagattgcggagcagagttcatgcaagacgcggactctcttccctcct
cctcgcctcacgattgacggcgtcttcgaccaggtgaaggcgatcagccagtgtgctggg
aaggacagccaggtgcataaacgcgagttgctgaagcgtctgctcgtcggaggaaaggga
tcggagccaaagtacatcattcgctttcttcaacaaagaatgcgcactggcgcctccact
gcgacagtttatcaggcacttgcctttgcatgcttcctcacgcataacgcccgcaacgga
cgccctgccatcggtgacacacgccgctacgttccttccccagaagaaaccagcaaagat
ccttcctcgtctccttcctctccttcctcgtctccttcctcgtcttcttcctcgtcttct
tcctcgtcttcctcgtcttcttcgtcttctgctccgttgccttcttcgatgagcgcggtc
gagctggagtctcacctgtcgcggatggagcagagcgtccgtcgagctctgtgcgaagtt
ccaaatgtggaggttgtggtggggcatctgctccagggggcagacgccgaggcactttcg
tcgctctgcgtagcgacacccggaattcccttgcagcccatgttggctcggccgacgcgc
ggattcgaggaagttatggagcgactgaagcagaccgaatttacgtgcgaattcaagtac
gacggcgaacgcattcagcttcacctagtcagcgaacaagcggcgaaacgaaccccgggg
ctgtgtccttcctcaacaggcgcttctgcttcttcctcggcaggcgcttctgcctcttcc
tctccaccggcgtctgcgtcttctgcctgtgggccgctgcggaagatctctccgactcgc
gtgcggttgttcagtcgcaacttggaggagatcacgcaaaagtatcccgacgtcatcgac
atgtttctcgcctctctccaaccgaccacggaggagtgcattctcgatggggaggtggtg
gcttacgacgaggagaaccggacgattctccccttccagactctcacaaggaggaagcga
aagggcgtcgaaaaagacggcatcgaagtgcgtgtggcgctcttcctctttgactgcatg
cgcctgaacggcgagtgtcttctgggcaagaccctcgaggcgcgccgcgaaaaaatgcgg
caagccatcgactttgaacgcagtcctctcgtccaacaggcggcctacaaggacatccgt
ggagcccaggacttcgaggacttcctcacggaagcaattgaaggcaactgcgaggggttg
atggtcaaaactctcagagaaaatgccacctacgaaccgtccaagcgctctcttaactgg
ctcaaggtgaagaaagactatgtcgacggactcacggactcggtggatctcgtccccatc
ggtgcgtgctacggaaaggggaagcgaagtggaactttcggcacctacttgctcgccgtg
tacaatcccgcagatgaaacgtttcagaccgtttgcaaagcagcaacgggtttcagcgag
gaggcgcttcaacagcaccacaaggctctgagtgaccgcatcatttcacacaaaaaacct
tactacgatgtgtctccgaagcttgaagcagatgtgtggtttgaggcctgccaggtttgg
gagtgccgagcagccgacttgtcaatttcccctgtccatacagctggaatcggagaaaag
tctcctgataagggtattggtctgcgcttcccgcgattcttgagagtcagagaagacaag
aaccccgaacaggcgacgacatcgacgcagattgtcgagatgtatacaaatcagtttcgg
cagaacaaagttcacggtggcagaaccaacgcagagagagaggaggaagaagtggaagac
gagagtgagtccgaggagcaaaggaaggaggattag

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