Toxoplasma gondii: TGME49_293460
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Entry
TGME49_293460 CDS
T01093
Name
(RefSeq) ATP-dependent DNA ligase domain-containing protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TGME49_293460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgo03400
]
TGME49_293460
Enzymes [BR:
tgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TGME49_293460
DNA repair and recombination proteins [BR:
tgo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TGME49_293460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
PTCB-BRCT
SR-25
Motif
Other DBs
NCBI-GeneID:
7900006
NCBI-ProteinID:
XP_018638624
UniProt:
A0A125YQT5
LinkDB
All DBs
Position
Ia:join(333243..333367,333957..334101,334615..334788,335276..335500,335918..336159,336963..337457,338340..338462,339705..339905,340372..340480,341084..341182,341928..342055,342805..342976,343606..344894,345328..345615,346099..346441)
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AA seq
1385 aa
AA seq
DB search
MMVAFPSSRNSGPSCEDILFADVCTVLDRLADPFAKAAEKMKFFARYLHRFSHLPISSLY
PLLRLLLPQLDRRRPPAQLKQPLLARIYAQVFALPPAAAARLKLYKDPAAATASAGGRPL
AARAGDFASCVAASVQERAGRRQPSVTVKELNRELDLVALAGTYSEKSVILHGLLPQLTV
NEHKWCMRILMKEVKMGGLSGERLLTLLHTDARKIVNQVSDLKSTLEVIDEEKAEAVHAK
RGGSAGGEEGVERDGPFGEKRDSLRLLFQPLRPMLARVVRPVAADIAAVLFGEGGKGKHG
TDSCPRPAPTNAPVSRVYFVERKYDGERLLVHIDKHASSGPVVRLLTRRGCDYTPLYGGD
FHHRSPSFSSSSSSSSASAFSSSASSSSASSSGFRWPKRERFPSEDEVRGETGDRETRGG
KRTRKEPEGLAGLAATLVEALRGSQAILDGELLAWDDDLESFLPFGTNKSVAAAETARCH
LSYVIFDVLYYRNSEGDEYSLLNMKLQDRKVLLERILRLSGNRLMLAPFTPACRPSEIVS
ALNSAIENRHEGLVVKDAASFYRLHSRKAEEKMQSRPRGGWFKLKPHLGSLPDTLDLIAI
GAFFAEGQRRREVNSSHLIDHCSHFLLGVLEGDGGPEAKCVKSFCKVGTGFSLETLREIR
DYLRLHCCRFQATQPPPWFDASTGSATSRLDVTWPPSCSFVMEVKGAELSQGKEFDMGAT
LRFPVAVRPFRRDKAWHEAMSETALLEFFAVAEECGGRLLSQPSSPSGAVATAPDRSLAG
SSTERRHALGLFYRHSGETASEESDSADEGLGAGSNTDLANVPAAAGEGNHGCSPKERPQ
KALLSSPSRLHVKPASGFSRMALLAPFRAADTSAIQPCSSALKGTDIWVLAGDEEAFPKA
SLEALVAHLGGKVSQTLSPSVTHIVADRPSFRTRTVAAAVAQLATQQRDFHSTLSEKRKR
RLSSLRSLPSRSSPFSSSSSPSCPSSSRLSSLSSAPSSSQHISVRVPPVLHFRWLLECAE
REEAVPLRPSLVIHGTPDTERLFSRHFDVFGDAFLEDETPTERGLGRLSAILAHAVEVAE
SQKERRAREGVRADACRERGEATVCEEREPRKSGAVRRGREETDGMLAREAEEEHLFDIS
DTEANAVRRELEAFLKNNPDSRETPARAGNSLEPLKMRLYVAPDDLAWRSLSLQQLKKLQ
NDDLETSTSSDCTAPSSPPLTVIRYSPFQQSSCAVSPSCYSSTLSSCDKLLHILASAYRA
SLVAQCCHRGARLVNTPAAATHVLLRFSAPLDVESGAMDSEGTREEPEHDEGKNGKNQEE
RGKEKTGTENETDAEQDGRGNKFRRDHQASRGPQLITADVLELMLRQKGPGKWKEDDADP
VQTSA
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgatggtggctttcccctccagccgcaactccggcccttcttgcgaggacattctcttt
gcggacgtatgcactgtcctcgatcgattggctgatccgtttgcaaaggcagctgagaaa
atgaagttctttgctcgctacttgcaccgcttctcgcatcttccaatttcttcactctac
cctctccttcgtctcctcttacctcaacttgatcgtcgccgtccccctgcgcagctgaaa
cagcctcttctcgcgcgtatatatgcccaagtgtttgcacttcctccggctgctgcggct
cgcctcaaactctacaaagacccagcagcggcaaccgcgtcagcaggcggaaggccgctg
gcggcgagagcgggagactttgcgagttgcgtcgctgcgtctgtccaggagagagctggc
cgaaggcagccaagtgtcacagtgaaagagctgaatcgcgaactcgacctcgttgcgttg
gcagggacctattcagagaaatctgtcattttgcatggccttcttccgcagctgacggtg
aatgagcacaagtggtgcatgcgcattttgatgaaggaagtgaagatgggcgggttgagt
ggagagcgcctcctcacgctcttgcatacagatgccagaaaaatcgtcaaccaggtctcg
gatctgaaaagcacactcgaggtcatcgacgaagagaaagctgaggcggtgcacgcaaag
cgaggaggctccgcgggcggtgaggagggagtcgagagggacggcccttttggagaaaag
cgagactctctgcgtctgctctttcaacccctaagacccatgctcgcgcgagtcgtccgg
ccggtcgctgccgacatcgccgcggttctcttcggcgagggcgggaaaggcaaacacggc
acggacagctgccctcggccagctcccacaaacgctcctgtctctcgcgtctacttcgtc
gagaggaaatacgatggggaaagactcctcgtgcatatcgacaaacacgcttcctcgggt
cctgtcgttcgtctcttgacccgtcgaggatgtgattacacacctctctatggtggagac
ttccatcatcgatctccttccttttcttcttcctcttcttcttcctctgcatctgctttc
tcttcttccgcttcctcttcttccgcttcgtcttcgggattccggtggccaaagcgtgag
cgcttcccttctgaagacgaggtacgcggcgagacaggcgacagagaaactagaggagga
aagcggacgcgcaaagagcccgagggcctcgcgggcctcgcggcgaccctcgtggaggct
ttgcgaggttcgcaggcgattctggacggcgagttgcttgcgtgggatgacgatcttgag
agttttctacccttcggcacgaacaaaagcgttgcagcagcggagacggcgcgctgtcat
ttgtcttacgtgatctttgacgttctgtactaccggaattcggagggcgacgagtactcg
cttctgaacatgaagcttcaagacagaaaagtgctcctcgagcggattctgaggctctct
gggaaccggctgatgctcgcgccgtttactcctgcgtgtcgtcccagtgaaattgtctcc
gcgctcaactcagcgattgagaaccgacatgaaggtctcgtcgtgaaagacgcagcgtct
ttctatcgcctccactccaggaaagcagaagagaaaatgcaatcacgcccacgcggcggc
tggttcaagttgaagcctcacctaggcagtctgccagacacgctggacctcatcgccatc
ggcgctttcttcgctgagggacagagacgacgggaagtgaactcttctcatctcatcgac
cactgttcccactttcttctcggcgtcttggagggcgacggcggccctgaagctaaatgt
gtgaagtctttctgcaaggtcggcactggcttttcgctcgaaactctgcgagaaattcgg
gactatctgcggctccactgttgtcgcttccaagcgacgcagccgccgccgtggttcgac
gcatccacaggcagtgccacctcgcgactcgatgtcacgtggccgccgtcgtgcagtttt
gtgatggaagtgaaaggcgcagaactttctcaaggaaaagagttcgacatgggagcgact
cttcgctttcctgtcgctgttcggccgttccgcagagacaaggcttggcacgaagccatg
tcggagacggcgctgcttgagttttttgctgtcgcagaagagtgtggcgggcgcctgctg
tctcagccgtcctcgccctcaggggccgttgctacggctccagacagaagcctggcgggg
tcgtcgacagagcgacgacacgcgttaggattgttttaccggcactctggcgaaactgca
tctgaggaaagcgactctgcagacgaagggctgggcgcaggcagcaacactgacttggcg
aatgttccagcagctgctggggaaggcaatcatggttgttcgccgaaggaaagacctcag
aaggcgttgctttcttcgccaagtcggctccacgtaaaacctgcttcgggcttctcgcgt
atggctctcctagcgcccttccgagcagccgacacgtctgcgattcagccatgctcctca
gcgttgaagggcacagatatctgggtcctcgcgggggacgaagaggcttttcctaaggcc
tctctggaggcgctcgtagctcatctaggcggaaaagtgtctcagaccctctccccgtct
gtcacccacatcgtcgcagatcgtccctcatttcgaacgcgaactgttgccgcagccgtc
gcccaactcgccacgcaacaaagagactttcactcaacactcagtgaaaaacgaaaacgc
aggctctcttctcttcgttcgctgccatctcgttcttctcccttctcttcttcttcctcc
ccttcttgcccctcttcttctcgtttatcttctctttcttctgctccttcatcttctcaa
catatttctgtacgtgtgcctccagtgcttcattttcgctggcttctcgagtgtgcagag
cgggaggaggcagtgcctctgcgtccgtctctggtgatccacgggacgcctgacacagag
cgtttgttttcgcgacacttcgacgtctttggagacgcgttcctcgaagatgaaacgccg
acagagcgaggcctagggcgtctctcggcgatcctcgcccatgcagtggaggtggcggag
agccagaaagagcgcagggcgagagaaggggtgagggccgacgcgtgtcgcgaacgtgga
gaggcaacggtctgtgaggagagagaacccaggaagagtggcgccgtgaggaggggtcgg
gaggagacagatggaatgctggcaagggaggccgaagaagaacaccttttcgatatttcc
gacacggaggcgaacgctgtgaggcgagagttagaagcgttcctcaaaaacaacccagac
agtcgggaaacacctgcccgagctggtaatagccttgaacccctcaaaatgcgactttat
gtggcgcctgacgatctcgcgtggcgctcgctgtctctgcagcagctgaagaaactccag
aacgatgaccttgagacatcgacgtccagtgattgcactgccccctcttctccacctttg
acggtgattcgttattctccttttcaacagtcgtcctgtgcggtttctccctcgtgttat
tcgtctacactgtcgtcgtgtgataagttacttcacatcttagcaagtgcttacagggcg
tccctggtggcgcagtgttgccatcgaggagcaaggcttgtaaacaccccggcagcagcc
acgcatgttcttctgcgcttttctgcacccctggatgtggaaagtggagctatggattcg
gaggggacacgagaagaacctgaacacgacgagggaaagaatggcaaaaatcaagaggaa
cgtggaaaagagaagacaggaactgaaaatgaaaccgatgcagagcaagatggaagaggg
aacaaattcagacgtgaccaccaagcttctcgcggtccgcagctgataactgcggacgtg
ctggaactcatgttaagacaaaaaggcccggggaagtggaaagaggatgatgcagaccct
gttcaaactagtgcataa
DBGET
integrated database retrieval system