Tinamus guttatus (white-throated tinamou): 104580936
Help
Entry
104580936 CDS
T08560
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
tgt
Tinamus guttatus (white-throated tinamou)
Pathway
tgt04510
Focal adhesion
tgt04512
ECM-receptor interaction
tgt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tgt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104580936 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104580936 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104580936 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tgt04147
]
104580936 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
tgt00536
]
104580936 (COL6A1)
Exosome [BR:
tgt04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104580936 (COL6A1)
Glycosaminoglycan binding proteins [BR:
tgt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104580936 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
104580936 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
vWA-TerF-like
Acetyltransf_1
Piwi
Motif
Other DBs
NCBI-GeneID:
104580936
NCBI-ProteinID:
XP_010226792
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MRLQNFLFTLLLQVCFLKGGLWAQRTEIDSRVANAQDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTDRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGRNELKNR
VSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPNHLDQRLNIIATDHTYRRNFTATSLKPTRELDVEETINTIINM
IKDNVEQVCCSFECQPPRGPPGPPGDPGNEGERGKPGLPGQKGDAGDPGRPGDMGPVGYQ
GMKGDKGTRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGVQGPP
GPKGDPGAYGPKGQKGEPGEDGKPGRQGIPGSPGEKGAPGNIGEPGPTGETGDEGSPGAD
GPTGERGGNGERGAPGSPGDRGPRGEPGEPGPPGDQGREGPLGPPGESGEAGPPGPKGYR
GDDGPRGNEGPKGAPGAPGLPGDPGLMGERGEDGPPGNGTIGFPGAPGQPGDRGGPGING
TKGYVGPKGDEGEAGEPGNDNPTSGPRGSKGAKGHRGPEGRPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEPGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTYTGEALQFTKENLVRRF
TSDKRVAIVITDGRSDTLRDPTPLSSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFAGPADITLLVDSSTSVG
SKNFETTKKFVKRLAERFLEAGKPADDSVRVSVVQYSGRNQQKVEAQFQYNYTVIAKAID
KMEFINDATDVNAALRYVMGLYQRSSRGGAKKRVLVFSDGNSQGITTRAIERAVQEAQQA
GIEIYVLAVGSQVNEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKI
AVD
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcaaaactttttattcactttgctacttcaagtctgtttcctgaagggaggc
ttgtgggctcagcgcacggaaatcgacagtcgagtcgcaaatgctcaagactgccccgtg
gacctgttttttgtgctggatacctcggaaagcgtcgccttaagggtgaagccctttggg
gacctggtcacacaagtgaaagacttcaccaaccggttcattgataagttgacagacagg
tactaccgttgtgaccgaaacttggtgtggaacgcaggggcgctgcattacagtgacgag
gttgtgctcattaagagcctcacctcgatgcccagcggcaggaacgagctgaagaaccga
gtgtcagccgtgaactacattgggaagggcacatacacggactgtgccatcaagcgaggc
attgaggaactgctcattggcggctcccatcacaaggagaataaatacctgatcgtggta
actgatggacaccccttggaagggtacaaggagccttgtgggggcctggatgatgctgcc
aatgaagccaaacatctaggaatcaaagtcttctctgttgccatttctcccaaccatctg
gatcagcggctcaacatcattgccacagatcatacctaccgtcgcaacttcactgccacc
agcctgaagccaacccgggagcttgatgtggaggaaaccataaacaccatcatcaacatg
attaaagataatgtggagcaagtgtgctgctcctttgagtgccagcctcccagaggaccc
cctggacctcctggtgacccaggcaatgagggagaaagaggcaagccgggtcttcctggc
caaaaaggagatgctggagatccaggcaggccaggtgacatgggtcctgttggctaccaa
ggaatgaagggtgacaaaggaactcgaggagaaaagggctcaagaggagccaagggagcc
aagggtgagaagggcaggcgtggaatcgatggcatcgatggcatgaagggtgaagctgga
tatcctggtttacctggctgcaaaggctcaccaggatttgatggagttcaaggtccacct
ggacccaagggagatcctggtgcctatggaccaaagggacaaaagggggaacctggagaa
gatggaaaacctggccgacaggggatccctggaagtcctggggagaagggtgcacctggc
aacattggtgaacctggaccgacaggagaaacaggagatgagggctctccaggtgcagat
ggtccaactggagaacggggaggcaacggagaaagaggcgccccaggatctcctggtgac
cgtgggcccagaggagagccgggagaacctggaccaccgggagaccaggggcgggaagga
cccctcgggccacctggagagtcgggtgaggctggacctccgggacccaaggggtacagg
ggagatgacggcccccgtggaaatgagggcccaaagggagcacctggagcacctgggttg
cctggggatcctggcttgatgggagaaagaggggaagatggccctcccgggaatggcaca
attggattcccaggtgcccctgggcagccaggagacagaggtggaccaggcattaatgga
acaaagggctatgttggtcctaaaggtgatgaaggagaagccggagagcctggcaatgac
aatccaacgtcaggtcccaggggcagcaaaggtgcaaagggtcacaggggacctgaaggc
cgtccgggaccaccaggacccgtcgggcctccaggaccagatgaatgtgaaattttggac
atcatcatgaagatgtgctcttgctgcgagtgcacgtgtggccctgttgacctcctcttc
gtgttggacagttcagagagtatcggtctgcagaacttccagattgccaaggatttcatc
attaaggtcattgatcggctaagcaaggatgagcgtgtgaagtttgaacctggtgagtca
cgcgtgggagtcgtgcagtacagccatgacaacacacaggagcttgtggccatgggggat
gccaacatagacaacattggggcactcaaacaggcagtcaagaacctgaaatggatagcc
ggtggcacctacactggagaggctctgcagttcaccaaggagaacttggtgcggagattc
acgtctgacaagcgtgttgccattgtcatcacagacggacgctctgacactctgcgggac
cctacaccactctcttccctgtgcgatgtcaccccggtggtttcccttgggataggtgac
attttccggaatcccccaaatccagatcacctgaatgacattgcttgtttaagcagaccc
accagaccaggactgtctattcagagggacaactatgctgagctcctggatgacaccttc
ttgcagaatatcacctcatacgtctgccaagagaagaaatgtccagactacacctgccca
atcacctttgctgggccagcagacatcaccctcctggtggatagctccaccagcgtcggg
agcaagaactttgagaccaccaagaagtttgtgaagcggctggcagaacggttcctggag
gcaggcaagcccgccgacgactctgtgcgcgtctcagtggtccagtacagtggcaggaac
cagcagaaggtagaagcacagtttcagtacaactacacagtcattgccaaagccattgac
aagatggagttcattaatgatgccacagatgtcaatgctgctctgcggtatgtcatgggg
ctgtaccagaggtcctcccgtggaggggcgaagaagagggtgctggtgttttctgatggc
aactctcagggaatcaccacgagggccattgagagggctgtgcaggaagctcagcaggct
ggcattgaaatctatgtgttggcagtgggcagccaagtcaatgagcccaacatccgtgtc
ctggtcacggggaagagcgcggactatgacgtggtctatggggagcgccacctcttccgt
gtgcccgactatacctctctgctgcgtggtgtcttctaccaaactgtctccaggaaaata
gctgttgactga
DBGET
integrated database retrieval system
