Taeniopygia guttata (zebra finch): 100221665
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Entry
100221665 CDS
T01082
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03013
Nucleocytoplasmic transport
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100221665 (UPF3B)
03015 mRNA surveillance pathway
100221665 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100221665 (UPF3B)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100221665 (UPF3B)
mRNA cycle factors
P-body specific factors
100221665 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
100221665
NCBI-ProteinID:
XP_030128463
Ensembl:
ENSTGUG00000003413
LinkDB
All DBs
Position
4A:complement(8768955..8775867)
Genome browser
AA seq
482 aa
AA seq
DB search
MKEDKENARPKERRGAPAAPAVLLAAAPGSGPAAGTDGRAGAAELDRLERPKDKKETLSK
VVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRD
RFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDE
KLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEE
RRKWKEEERRKRKEAEKLRKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLERKEKSKKL
ERETLREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFDRDRDYERAQREKL
RRQEEERRRQKERYEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSSTDKSEKVTKDD
KKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPPDQGVDKKQEGETSHTKE
EE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcggcgcggggcccccgccgcgccg
gcggttctgctggccgcggcacccggctcgggccccgccgccggcacggacggcagagcc
ggcgccgccgagctcgatcgcctggagcggcccaaggacaagaaggagacgctcagcaag
gtggtgatccgccggctgccgcccagcctgacgaaggagcagctggaggagcacctgcag
cctctgcccgagcacgactacttcgagttcttcgccaacgactccagcttgtacccgcac
atgttctccagagcctacatcaacttcaagaaccaggaagacatagtcctattcagggat
cgcttcgacggctacgtttttgtcgatcacaaaggtcaggaatatgctgcaatagttgag
tttgcacctttccaaaaagctgccaaaaagaagagtaagaaaaaggatgccaaaactgga
actattgaagatgatccagaatacaagaagtttttggaaagttacagtgcagatgatgaa
aaattaacctccactcctgaaactttgttggaggaaatagaggcaagaaacaaagagcta
atagctaaaaagactactcctttattgaacttcttgaaaaataaacagagactgagagaa
gaaaaaagagaggagagaaggaggagagaattagaaagaaaaagacaaagagaagaagaa
agaagaaaatggaaagaagaggagagaaggaagagaaaagaagcagaaaaattgaggaaa
gtagacagatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagcta
cttaagaagcctgaaaaagatgaaaaagacttggagagaaaagaaaaatccaagaaactg
gaaagagagactctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgat
ggggagacaaaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagg
gaccgagatagagattttgacagagacagagactatgagagagcacagagagagaaactg
agacgccaagaagaggagcgtcggaggcagaaagagcgctatgagaaagagaaggttttt
agaagaaaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaa
agtgatcttacagactttaccagcagcacggacaaatctgagaaagtaaccaaagacgat
aaaaaagaggatacaattaagagggatcgtatcagaaacaaggatcgcccagcaatgcag
ctgtaccagcccggagcccgaagccggagcagattgtgtcagtatgaagacagtgctgca
aagcccccagatcagggagtggataagaaacaagagggtgagaccagtcacacgaaggaa
gaggagtga
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