Taeniopygia guttata (zebra finch): 100224732
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Entry
100224732 CDS
T01082
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X3
KO
K14328
regulator of nonsense transcripts 3
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03013
Nucleocytoplasmic transport
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100224732 (UPF3A)
03015 mRNA surveillance pathway
100224732 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100224732 (UPF3A)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100224732 (UPF3A)
mRNA cycle factors
P-body specific factors
100224732 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF5427
Motif
Other DBs
NCBI-GeneID:
100224732
NCBI-ProteinID:
XP_012425081
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All DBs
Position
1:complement(88002035..88028313)
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AA seq
469 aa
AA seq
DB search
MDAPLQQEAPRRDTDAPPNPSPPSPLPPPLHPAPGKQREEKRSALSKVVIRRLPPCLTKE
QLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGL
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYCADEDKICANPEILLGEI
EAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRREEER
RKRKEVEKQKKISEKEIRIKLLKKPEKGDELANEKHKEKGEEADIEENKWDKSLGSGSIK
SKSLESSLKELKEKSQNDSDKEQRDLERRFREKEPERQRYRLDDGRKHRTHYEFDKFMRR
NEEELKWGKGYNQDRGKKGNYNYSFTVEAVDKLGKEDKCDDMASKKERIRNKDRPAMQLY
QPGARIRTHMGPTSKTYDCSGKSFEDALDKKYEADNSAGACSEKTEEAE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggacgccccgctgcagcaggaggcgccgcgccgcgacaccgacgctccgccgaaccca
tccccgccgtccccgctgccgccgccgcttcacccggcgccggggaaacagcgggaggag
aagagatcggcgctgagcaaagtggtaattcgaaggcttcctccttgtctaaccaaggag
caactggaggaacagctgcatcctctacctgcccatgattattttgagttttgcactgct
gatcccagcctttatcctcatctctactcaagagcatacattaactttagaaatcctgag
gacatccttctttttagagatcgctttgatggctatgtcttcattgataataaaggtttg
gaatatcctgcagtggttgagtttgctccattccagaagatttcaaaaaagaagctgaag
aagaaagatgctaaagctgggagcattgaagatgatccagaatataggaaatttttagag
aattattgtgctgatgaagacaagatctgtgccaatcctgagattcttttgggagagatt
gaggccaaaacaagggaactcattgctagaagaacaacaccccttttggaatatattaaa
aatagaaaattagaaaagcagagaatacgagaagagaaaagagaagaacgaaggcggaga
gaattggagaagaaacgtttgcgggaggaagagaaaaggaagcgcagagaagaggaaaga
cgtaaaagaaaagaagtggagaagcaaaagaagatttctgaaaaagaaataaggattaag
cttctcaagaagcctgaaaaaggagatgaactggccaatgaaaagcacaaagaaaaaggg
gaagaagctgacattgaggaaaacaaatgggataaatcacttggatctgggagtataaaa
tccaaatctttggagagttcactaaaggaacttaaggaaaagtcacaaaatgatagtgac
aaagagcaaagagatttggagcgaagatttcgagaaaaagaacctgaaagacaaaggtat
cgattggatgatggcagaaagcatagaactcactatgagtttgacaagtttatgagaagg
aatgaagaagagctgaaatgggggaaaggatacaaccaagacagaggaaagaaagggaac
tacaactacagcttcactgtggaggcagtagacaaactgggtaaagaggacaagtgtgat
gacatggcatccaaaaaggagcgcataagaaataaggatcgtccagccatgcagttgtac
cagccaggagctcgcatccgaacacatatgggacctacaagtaaaacctatgactgcagt
gggaaatcctttgaagatgctcttgataaaaagtatgaggcagataattcagctggagct
tgttctgaaaagactgaagaagcagaataa
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