Taeniopygia guttata (zebra finch): 100225432
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Entry
100225432 CDS
T01082
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tgu00536
]
100225432 (COL25A1)
Glycosaminoglycan binding proteins [BR:
tgu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100225432 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100225432
NCBI-ProteinID:
XP_030127461
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All DBs
Position
4:46076264..46374471
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AA seq
725 aa
AA seq
DB search
MGGGGKEIKAAAAEGCASTLGKSRGAAGQDGNGKPGGSGKPGLGKPGCGGDRCPGRAGPV
GSALAALLSALAAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAM
MQEKVERLLAQKSYEHLAKIRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGP
PGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGP
PGDTGKDGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGKDGQVGEPGLPGI
AGEKGEAGLKGDPGERGEKGEAGENGLKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEP
GLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGIPGPKGKTG
EPGSRGPKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVT
GPPGPPGPQGLQGPKGEPGSPGASGADGEQGPKGSKGDTGDPGMPGEKGGIGLPGLPGAN
GMKGEKGDTGLPGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGLKGLKGEPG
QKGDRGPLGLPGASGLDGKPGARGIDGPVGPHGPAGPKGERGEKGTVGDPGPRGPYGLPG
KDGEPGLDGFPGPRGEKGDIGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMP
GCWQK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagctgaagggtgtgcgagcacgctg
gggaagagccgaggagccgcaggacaggatggcaacgggaagcccggcggcagcgggaag
cccggcctcgggaagcccggctgcggcggggaccgctgcccgggccgggccgggccggtc
ggctccgcgctggccgcgctcctctcggcgctggccgcggcttcctgcgtctacctgggg
gtgcggaccagcgacctccaggccagggtcgcggccatcgaaggcgcccgagggggcttc
tccgccgccgccccgctcccgccgctgcccggcttttccttggagcagctgaacgcgatg
atgcaggagaaagtggagcgacttctcgcccagaaatcctacgagcacttggcaaaaatc
cgagtagcgagagaagcggctccagagtgcaactgcccaccaggtcctccagggaaaaga
ggtaagcggggaagaagaggagagactggacctcctggtcagcctggtcctcaaggccct
cctggtccaaaaggcgagaagggagatcaaggtgatcagggccctcggatggtgtttcct
aaaatcaatcatgggtttctctctgctgatcagcagctcattaaacgccgcctcattaag
ggggaccaaggacaagctggaccccctggacctccagggccaccaggacccagaggtccc
ccaggagatactggcaaagatggtcctcgtgggatgcccggcttaacgggtgagccagga
aaaccaggagaacaaggattgacaggacctcaggggcctccaggacaaaagggttctgtc
ggagtgcctggtgttccagggaaagatggacaagtgggtgaacctggtttgcctggcata
gcaggagagaagggagaagcagggctcaagggtgaccctggagaaagaggagaaaagggg
gaggctggtgagaatggactgaagggtgacacaggagaaaagggtgaccctggctcttct
gcagctggaattaagggtgaacctggtgaatctgggcggcctgggcaaaagggtgaacca
ggccttcctgggcttcctggactccctggaataaagggtgaaccaggtttcattggccca
caaggagaacctgggttgccagggctgccaggaacaaagggtgacagaggagaggcaggc
cctgttgggaagggtgagcgaggtgaacctggaatccctggaccaaaggggaaaacaggt
gaacctggatctagaggccccaaagggtcaaagggtgatacaggtgagagaggtgacaca
ggatctgcaggtccacggggaccacctggacagaagggtgatcaaggtgcgacagagata
attgattataatggaaatatccatgaagctctgcagaggattgccaccctgactgtcacg
ggaccaccaggaccaccgggaccccaagggctgcaagggccaaagggcgaaccaggatcc
ccaggagcttcaggagctgatggagagcagggtcctaagggctcaaaaggcgacacaggt
gatcctggaatgcctggagaaaagggaggaattggactgcctggcctaccaggagccaat
ggcatgaaaggtgaaaaaggagacactggtttgcctggtgcccaaggtccttcaatgata
ggaccacctggaccaccagggccacatggtcctccaggccccatgggacctcatggactg
cctggcccaaagggtgaaccagggttaaatggtcttaaaggattgaagggtgaaccaggt
caaaagggtgacagagggccccttggtcttccaggagcatctggcttagacgggaagcca
ggagcccggggcatagatggcccagttggtccccatggccctgcaggtcccaaaggagag
agaggtgagaagggaactgtaggtgaccctggacccagaggaccatatggcttgcctggc
aaagacggcgagcctggccttgatggtttccctggtcctcgaggagaaaagggtgatata
ggagaaaagggagaaaagggattccgtggagttaagggggaaaaaggggagccaggccag
cctggcctggatgggctggatgccccttgccaattgggtcctgatggattaccaatgcct
ggctgttggcaaaagtga
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