Taeniopygia guttata (zebra finch): 100226890
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Entry
100226890 CDS
T01082
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tgu00535
]
100226890 (COL12A1)
Proteoglycans [BR:
tgu00535
]
Extracellular matrix (ECM) proteoglycans
Others
100226890 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
DUF4998
Copine
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
100226890
NCBI-ProteinID:
XP_002190467
Ensembl:
ENSTGUG00000012648
LinkDB
All DBs
Position
3:complement(29818502..29916769)
Genome browser
AA seq
3122 aa
AA seq
DB search
MKTALCSAVAALCAATLLSSIEAEVNPPSDLNFTIIDEHNVQMSWKRPPDAIVGYRITVV
PTNDGPTKEFTLSPSTTQTVISDLIPDVEYIVSIASYDDREESLPVFGQLTIQTGGPGIP
EEKKVEAQLQRCSISAMTDLVFLVDGSWSVGRNNFGYILDFMVALVSAFDIGEEKTRVGV
VQYSSDTRTEFNLNQYFRRSDLIDAIKRIPYKGGNTMTGEAIDYLVQNTFTESAGARKGF
PKVAIVITDGKAQDDVEIPARELRNIGVEVFSLGIKAADAKELKLIASQPSLKHVFNVAN
FDGIVDIQNEIILQVCSGVDEQLGELVSGEEVVEPPSNLVATQISSKSVRITWDPSTSQI
TGYRLQFIPMIAGGKQHVLSVGPQTTALNVKDLSPDTEYQINVYAMKGLTPSEPITIMEK
TQQVKVQVECSRGVDVKADVVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPRKVQISL
VQYSRDPHMEFSLNRYNRVEDIIQAINTFPYRGGSTNTGKAMTYVREKVFVTSKGSRPNV
PRVMILITDGKSSDAFKEPAIKLRDADVEIFAVGVKDAVRTELEAIASPPADTHVYTVED
FDAFQRISFELTQSVCLRIEQELAAIRRKSYVPAKNMVFSDITSESFKVSWSPAGSEVLS
YLIKYKVAVGGDEFIVSVPASSTSSVLTNLLPETTYAVSVISEYEDGDGPPLDGEETTLE
VKGAPRNLRITDETTDSFVVGWTPAPGNVLRYRLVYGPLTGGERRQVTVSANDRSTTLQN
LNQDTRYEVSVVPEYQSGPGNSLNGYAKTDEVRGNPRNLRVSDATTSTMKLSWGAAPGKV
QQYFITYTPVAGGETKEVTVKGDTTSKVLKGLDQATRYALTVSALYASGAGDALSGEGET
LEERGSPRNLVTTDITDTTVGLSWTPAPGTVNHYRIVWKSHYDDTMGEKRVPGNTVDAVI
EGLEPETKYRISVYAAYSSGEGDPVEGEAFTDVSPNARTLTVDNETENTMRVKWQPSPGK
VLSYRVNYRARSGGRQMSGRVNAPATSIVLKRLKPRTTYDLTVVPIYDFGHGKSRKGEGT
TASPFKPPRNLRTSDSTMSSFRVTWEPAPGRVKGYKVTFHPTEDDGSLGELIVGPYDSTV
VLEELRAGTTYKVNVFGMFEGGESNPLVGQEMTTLSDTTTEPFLSRGLECRTRAEADIVL
LVDGSWSIGRPNFKTIRNFIARIVEVFDIGPDRVQIGLAQYSGDPRTEWNLNAYRTKQSL
LEAVANLPYKGGNTLTGMALDFILRNNFKPVAGLRPRARKIGVLITDGKSQDDVVAPSRK
LRDEGVELYAIGIKNADENELKQIATDPDDIHAYNVADFSFLATIVDNVTTNLCNSVKGP
GDLPPPSNLVISEVTPRSFRLRWSPPPESVDRYRVEYYPTSGGSPKQFYVSRMERTTVLK
DLQPETEYVVNVFSVVEDESSEPLIGRETTLPISSVRNLNVYDIGSTYMRVRWEPLNGAT
GYLLTYEPVNATVPATEKEMHVGPSVNEVQLVDLIPNTEYTLTAYVLFGDMKSDPLTTQE
VTLPLPGPRGLTIQDVTHSTMNVLWDPAPGKVRKYILRYKITDDADVKEVELDRLKTSIT
LSDLSSQKLYNVKVVAVYDEGESIPTNAEAVTQPVPAPVNLRITDITTNSFRGTWDHGAP
DVSLYRITWGPYGKAEKQETILNGEENSLVFENLNPDTLYDVSVTAIYPDESESDELIGS
ERTLPLVPITTQAPKSGPRNLQVYNATSHSLTVKWDPASGRVQRYRIIYQPISGDGPEQS
TTVGGRQNSVVIQKLQPDTPYAITVSSMYADGEGGRMTGRGRTKPLTTVKNLMVYDPTTS
TLNIRWDHAEGSPRQYKVFYGPTAGGAEEMTTVPGNTNYVILRTLEPNTPYTVTVVPVFP
EGDGGRTSDTGRTLERGTPRNIHVYNPTPNSMNVRWEPAPGPVQQYRINYAPLSGPRPSE
SIVVPGNTRDVILERLTPDTAYSISVIALYADGEGNPSQAQGRTLPRSGPRNVRVFDETT
NSLSVQWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGIRNNVILQPLQSDTPYKITVVAV
YEDGDGGQLTGNGRTVGLLPPQNMYITDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
REFFVGEVTSYTLHNLSPSTTYDVNVYAQYDSGMSIPLTDQGTTLYLNVTDLTSYKVGWD
TLCIRWSPHRSATSYRLKLNPTDGSRGQEITIRGSETSHCFTGLSPDTEYNATVFVQTPN
LEGPPVSMRAHTVLKPTEAPTPPPTPPPPPTIPPARDVCRGAKADIVFLTDASWSIGDDN
FNKVVKFVFSTVGAFDLINPAGIQVSFVQYSDEAKSEFKLNTFDDKAQALGALQNIQYRG
GNTRTGKALTFIKEKVLTWESGMRRGVPKVLVVVTDGRSQDEVRKAATVIQHSGFSVFVV
GVADVDYNELAKIASKPSERHVFIVDDFDAFEKIQDNLVTFVCETATSTCPLIYLEGYTS
PGFKMLESYNLTEKHFASVQGVSLESGSFPSYVAYRLHKNAFVSQPIREIHPEGLPQAYT
IILLFRLLPESPNEPFAIWQITDRDYKPQVGVVLDPASKVLSFFNKDARGEVQTVTFDND
DVKKIFYGSFHKVHIVVTSSNVKIYIDCSEIMEKPIKEAGNITTDGYEILGKLLKGDRKS
ATLEIQNFDIVCSPVWTSRDRCCDLPSMRDEAKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGLTGSSGPPGPRGETGPPGPQGPPGPQGPNGLSIPGEPGRQGMKGDAGQPG
LPGRSGTPGLPGPPGPVGPPGERGFTGKDGPTGPRGPPGPAGAPGVPGVAGPSGKPGKPG
DRGTPGAPGMKGEKGDRGDIASQNMMRAVARQVCEQLINGQMSRFNQMLNQIPNDYYSNR
NQPGPPGPPGPPGAAGTRGEPGPGGRPGFPGPPGVQGPPGERGIPGEKGERGTGSQGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNAGIRGPPGPPGYCDSSQCASIPYNGQG
FPEPYVPESGPYQPEGEPFIVPMESERREDEYEDYGVEMHSPEYPEHMRWKRSLSRNAKT
KP
NT seq
9369 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagcgctgtgctcggcagttgctgctctgtgtgcagccaccctcctgtcctcc
atcgaggctgaagttaacccaccatcagacttgaattttacaattatagatgaacataat
gttcaaatgtcatggaaaagaccaccagatgcaatagtgggttacagaataactgttgtt
ccaacaaatgatggacctactaaagaatttactctttcacctagcactacccaaactgtc
atatcagatcttatacctgatgtagagtatattgtatcaatagcttcatatgacgacaga
gaggagagtctgcctgtttttggccagctgacaattcagacaggtggcccaggcatacca
gaggaaaagaaggttgaggctcaattacaaagatgctccataagtgcaatgacagattta
gttttcctggtggatggttcatggagtgtaggaagaaataactttggatatattctggac
ttcatggttgcccttgtatcagcttttgacattggggaagaaaagacaagagttggagtt
gttcagtatagctcagatacaagaacagagttcaatttaaatcagtatttcagaagaagt
gatcttattgatgcaattaagaggataccttacaaaggtggcaacacaatgacaggtgag
gctattgattaccttgttcaaaacaccttcactgagtctgctggagcaagaaaaggcttt
cccaaagtagccattgtcattactgatggaaaagctcaagatgatgtagaaattcctgca
agagagcttcgcaacataggagttgaagttttctccttgggtatcaaagcagcagatgca
aaggaactcaagctcattgcatctcagccatcactgaagcatgtgttcaatgtggctaat
tttgatggaattgtggatatacagaatgaaattatcttgcaagtgtgctctggtgttgat
gaacaactaggtgaactggttagtggggaagaagtggtggagcctccttcaaatctggtg
gcaactcagatctcctcaaagtctgttagaatcacttgggatccatccacaagccaaata
actggctatcgtctgcaattcattccaatgatagctgggggaaaacaacatgtactgagt
gtgggtcctcagacaactgctctgaatgttaaagatctctctccagacacagagtatcaa
attaatgtttatgcaatgaagggactgacccccagtgagccaataacaataatggaaaaa
acacaacaagtaaaagttcaagtggaatgctcacgtggtgtggatgtaaaagctgatgtt
gtgtttttagtggatggttcctacagcattggtatcgccaattttgttaaagtaagagcc
tttttggaagtgttggttaaaagctttgagatatcacctcgaaaagtacagataagtctt
gtccagtacagcagagatccccatatggagttttctttgaacagatacaacagagtggaa
gacataattcaggctattaacactttcccctacagaggtggatctaccaacacaggcaaa
gcaatgacatatgtgagggagaaagtatttgttaccagcaaaggatcaagaccaaacgtg
ccgagagtaatgattcttatcactgatggaaaatcatcagatgcttttaaagaacctgca
attaagctgagggatgcagatgtagaaatatttgcagttggtgtgaaggatgcagtgcgt
acggagttggaagctatcgcatcacctcctgcggacacccatgtttacacagtagaagat
tttgatgcctttcaaagaatatcatttgaacttacacagtctgtctgcctacgaattgag
caggaactggctgctataaggagaaaatcttacgtacctgcaaagaacatggtcttttct
gacataacatcagagagtttcaaagtgagctggtctccggctggatctgaggttttgtcc
tatctcatcaaatataaagtagcagtcggtggagatgaattcattgtttcagtaccagct
tcaagtactagctcagttctcaccaacttactacctgaaactacttatgcagtcagtgtg
atttctgaatatgaagacggtgatggccctcccttggatggagaggaaaccaccttagaa
gttaaaggtgcccctcgaaacttaaggattacagatgaaactactgatagctttgtagtt
ggctggactccggctccaggaaatgtcctacggtacaggcttgtttacggaccacttact
ggaggagaaaggagacaagtgaccgtctcagcaaatgataggtcaactactctgcagaat
ttgaaccaagatacaagatatgaagtgtctgttgttcctgagtatcagtctgggcctggg
aattcattgaatggatatgcaaaaactgatgaagtccgaggaaatccaaggaatttgaga
gtttctgatgctacaacatcaacaatgaagctgtcatggggtgctgctcctggcaaagtg
cagcagtactttataacatacactccagtggcaggaggtgaaactaaggaagtgactgtg
aaaggtgacactacctctaaagtgctgaaaggcttggaccaagccactaggtatgcactg
actgtgtctgccttgtatgcctctggagcaggagatgccctttctggagagggagaaaca
cttgaagaacgtggttcaccacgtaatttggttaccacagacataaccgacactacagtt
gggttatcatggacaccagctccaggaacagttaaccattacaggatagtatggaaatca
cattatgatgataccatgggagagaagagagtccctggaaatacagtagatgctgtgata
gaaggcttggagccagagactaaatacaggatttcagtatatgcagcctacagcagtgga
gaaggagacccagtagaaggagaagcttttactgatgtgtcaccaaatgccaggactctg
acagtagacaacgagacagaaaatacaatgagagttaaatggcagccttcgcctgggaaa
gtcttgtcttatcgtgtgaactacagagcacgcagcggaggaagacaaatgtctggaaga
gtaaatgctcctgctaccagcatagtgttaaagcgacttaagccccgaactacatatgac
ctaactgttgttccaatttatgattttggacatgggaaatcaagaaaaggagaaggaaca
acagcttctccctttaagccacctcgaaatctgagaacttctgattcaactatgtcaagt
ttcagagtaacctgggagccagccccagggagagtgaaggggtacaaagtaactttccac
cctactgaagatgatgggagtcttggagaattaattgtggggccatatgacagcacagtt
gtattggaggagcttagggcaggaactacctataaggtaaatgtttttgggatgtttgaa
ggaggagagagcaaccctctggttggacaagagatgaccaccctttcagatactactacg
gagccatttttatctagaggtttagaatgtagaaccagagcagaagctgatattgtgcta
ctggtggatggctcatggagtattgggcggccaaattttaaaaccatcaggaacttcatt
gcccgtattgttgaagtttttgatattggtcccgacagagtccagattggtcttgcacag
tatagtggtgatcccaggacagaatggaatctcaatgcttaccgaaccaaacagtctttg
ttagaggctgtagccaacttaccatacaaaggaggcaatactctaacaggaatggccttg
gatttcatcttaagaaacaacttcaaaccagttgccggtttaaggcccagagctcgcaaa
attggtgttctcatcactgatggcaaatcacaagatgatgtagtcgccccttcaagaaaa
ctcagagatgagggagtggaactgtatgcaattggtatcaaaaatgcagatgaaaatgaa
ttgaagcagattgcaacggatccagatgacatccatgcttacaatgttgcagatttctcc
ttcctggctaccattgttgataatgtaaccacaaatctgtgtaacagtgtgaaaggtcca
ggtgatttgccacctccttcaaatttagttatttcagaagtgacacctcgttctttcaga
ctgagatggagcccacctcctgagagtgttgatagatacagagttgaatattatcctacc
tctggaggtagccctaaacaattttatgtaagtaggatggaaagaacaacagttctgaaa
gatctacaacctgaaacagaatatgtggttaatgtgttttctgtggtagaagatgaaagc
agtgaacctctgatcggcagggaaacaactttgccaatctcttctgttagaaacttgaat
gtttatgacattggatcaacttacatgagagtgagatgggaacctctcaatggagctact
ggttatttgttaacatatgaacctgtgaatgctacagtcccagccacggagaaagagatg
catgtgggaccatcagtgaatgaggtgcagctggtagatctcattcccaacaccgagtac
actttaacagcttacgtattgtttggtgatatgaagagtgacccactcaccacacaggaa
gtgacattacctttgcctggacccagaggtttaacgattcaggatgttactcacagcacc
atgaatgttctttgggatcctgccccaggaaaagttcgaaaatacatcctaagatacaaa
ataactgatgatgctgatgtaaaggaggtggaacttgacagactcaaaactagcattact
ctctctgacctttcctcccaaaaactgtacaatgtaaaagttgttgcagtatacgatgaa
ggggaatccataccaacaaatgcagaagctgtcactcaacctgtgccagcaccagtcaat
ctcagaatcacagatataactacgaatagtttcaggggtacttgggatcatggagctcca
gatgtctctctatatagaataacatgggggccctatggaaaagcagaaaaacaggagact
atcttaaatggggaagagaatagtttggtctttgaaaatttgaatccagatacattatat
gatgtctcagttactgccatctatcctgatgaatcagaaagtgatgagctcattggcagt
gaaagaacattacccttggtacctatcactacacaagccccgaagagtggcccacgaaac
cttcaggtgtacaatgcaacttcacacagtttgactgtcaaatgggatcctgccagtggt
cgagtgcagagatacaggatcatttaccaacctatcagtggggatggccctgaacagtcg
actactgttgggggacgacagaacagcgtggtgatacagaagctgcagcctgacacacca
tatgctattactgtgtcatcaatgtatgcagacggtgaggggggacgaatgacaggacga
ggcagaaccaaacctctcaccactgtgaagaacttgatggtttatgacccaaccaccagt
actctgaatattcgatgggaccatgcagaaggaagtcctcgccagtacaaagtgttttat
ggacctacagctggaggtgcagaagaaatgaccacagtaccaggaaatacaaactatgtc
atcctgaggactcttgaacccaacacaccttacactgtaactgtggttccagttttccca
gagggggatggtgggcgtacctctgacactggacgcaccttggagagaggaacaccaaga
aacattcacgtttacaatcccacaccaaacagcatgaatgtccgttgggaacctgctcca
ggtccagtacagcaatatagaattaattatgctccactgtctggcccaaggccatcagaa
tctattgtggtgccaggcaacactcgtgatgtgattcttgagcgcttgactcctgacact
gcttactcaataagtgttatagctctgtatgcagatggagagggaaatccaagccaagca
cagggaagaacattgcctcgcagtggtccaaggaatgtgagagtatttgatgagactaca
aacagcctctctgtacaatgggaccatgctgatgggccagtccagcagtacagaatcatt
tattcacccactgtgggagaccctattgatgaatatacaacagttcctggcataaggaat
aatgtgatactacaaccactacaatcagatacaccatataaaattactgttgttgctgtg
tacgaagatggagatggtggtcaactgactggaaatggcagaactgttggcctgcttcct
cctcaaaatatgtatataactgatgaatggtatacacgtttcagagtttcctgggatcct
tcaccatcccctgttcttggctataaaattgtatacaagcctgtgggttcaaatgagccc
agggagttttttgtgggagaagtgacttcctacactttgcataatctgtctcccagtact
acttatgatgtgaatgtttatgcccagtatgattctggaatgagcatacctttgacagat
caaggcactacattatatttgaatgtcactgacctcacaagttacaaagtgggttgggat
actctctgtatccggtggtcacctcatcggtcagcaacctcctacagactgaaactaaac
ccaactgatggttccagaggacaggaaatcacaatacgtgggtcagaaacgagccactgt
tttactggcctctcaccagacacagaatacaatgctactgtctttgttcagacccctaac
cttgagggacctccagtctctatgagggcacatacagtcctcaaacctactgaggcgcca
actccaccaccgacacctcctccacctcccacaatccctccagctcgggatgtatgcaga
ggtgccaaagcagacatagtattcttgactgatgcttcctggagtattggtgatgataat
ttcaacaaagtagtgaaatttgtttttagtacagtaggagcctttgatttaatcaatcct
gctggaatccaggtttcatttgtgcagtacagtgatgaggcaaaatctgaatttaaactg
aatacatttgatgacaaagcccaggccctgggagctcttcaaaacattcagtatagagga
ggaaacacaaggacaggcaaagccctaacatttatcaaagaaaaggttttgacttgggag
agtggcatgcggcgaggtgttcccaaggtacttgttgttgtcacagatggtcggtctcag
gatgaggtgaggaaagcagcaacagtcatacagcactctggcttcagtgtctttgtggtt
ggtgtggctgatgtggattacaatgaactggccaagattgccagtaagcccagtgagcgt
catgtatttattgttgatgactttgatgcctttgaaaagattcaagataaccttgtcacc
tttgtgtgtgagacagctacctcaacttgtccccttatttacttggagggatacacttca
cctggtttcaagatgctggaatcatacaatctaacagagaagcattttgcttctgtacaa
ggagtttcactggaatcaggctctttcccaagctatgtagcttacagacttcacaaaaat
gcctttgtcagtcagccaatacgggagattcacccagaggggttgccacaggcatacact
atcattttgttattccgtcttctgcctgaatcccccaatgagccttttgcaatttggcag
attacagacagagattacaaaccacaagttggagttgtgcttgatcctgccagcaaagtg
ctatcattctttaacaaggatgcaagaggagaggttcaaactgtaacttttgataatgat
gatgtaaagaaaatcttttatggaagcttccataaggtccatattgttgtaacttcatca
aatgttaagatttacattgactgcagtgaaataatggaaaaaccaattaaggaggctggc
aatatcacaactgatggctatgaaatacttgggaagcttctaaaaggggaccgaaaatca
gcaacattagaaatacagaattttgacattgtgtgcagtccagtttggactagcagagac
agatgctgtgatctcccttctatgagagatgaagcaaagtgcccagctcttccaaatgct
tgtacctgtactcaagacagtgttggacctccaggacctcctggaccagctggtggccca
ggcgctaaaggtccaagaggtgaaaggggtttgactggatcatctgggcctcctggtcct
cgtggtgagacaggtcctccgggccctcaaggtcccccaggtccacagggtcccaatggg
ctgtcaatcccaggcgaaccgggtcgtcaaggaatgaaaggggatgctggccagcctgga
ctcccagggcgatcgggaacgccaggtttacctggtccacctggaccagtgggacctcca
ggagaaaggggtttcacaggaaaagatggtcccacaggtcccagaggcccaccaggacca
gcgggtgctcccggagttccaggagttgctggcccaagtggaaaaccagggaaaccagga
gatcgtgggacaccaggtgcacctggaatgaagggagaaaaaggtgacagaggtgatatt
gcttctcaaaacatgatgcgagcagttgcaagacaagtttgtgaacaactgataaatggt
caaatgagccgattcaatcaaatgctgaatcaaatcccgaatgattattattcaaaccga
aaccagccagggccaccaggtccacctggtcccccaggagctgctgggacaagaggagaa
cctggacctggaggaagaccaggattcccaggacctcctggggttcaaggaccacctggt
gaaagaggaatccctggagagaaaggtgaaagagggactggatcccaaggaccacgaggt
ttgccaggaccacctggtccacaaggagaatctagaactggtccaccaggctccacagga
tcacgaggaccaccagggccaccaggccgtcctggcaatgcgggtattcggggtccccca
gggccaccaggatattgtgattcatcccagtgtgctagcatcccttacaatggccaagga
ttcccagaaccatacgtgcctgaaagtggaccctatcagcctgaaggtgaaccctttata
gtacctatggagtcagaaaggagagaggacgaatatgaggactatggagttgaaatgcat
tcaccagaataccccgagcacatgcgctggaaaagatcactgtcaagaaatgcaaaaaca
aaaccgtaa
DBGET
integrated database retrieval system
