Taeniopygia guttata (zebra finch): 100227810
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Entry
100227810 CDS
T01082
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100227810 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgu03400
]
100227810 (MSH6)
DNA repair and recombination proteins [BR:
tgu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100227810 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
100227810
NCBI-ProteinID:
XP_030124718
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Position
3:complement(91045692..91060091)
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AA seq
1417 aa
AA seq
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MRRSAIAERPSHGSFEPSQFCSSPGQRGRPGRARPSALPAKAGAGRGGAARGQRGFGAQG
GAVPAAAMSRQSTLLRFFPRAAPPPAAGSEPRSEPRRRSSGERNGLQAAGSPPGGAGRAA
ARRGENGEKGAGGGAAAKAPSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPTERTILRGKG
KATRVHVQFFDDSPTRGWISVKYLKPYKGSSDGETMKGGMFYSTKPEIKRAMVLADDAMK
KDKIKRLELAVCNEPSDTEEEEEEIEEMSENASGNSEDCNSEEDVKSNKRLMSRERAVKT
KRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSGVDENESSDTETEAESVAESPIKVPA
KRKRREVKKPAKRSSLGNECSETPKRAATVSSEAKSKLTSFAAPESFESQANASSGGTGG
FSVWEHEKLDWLQEGKRRDAHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNF
DAVICYKVGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVA
RVEQTETPEMMEARCKSKGQSTKFDKVVRREICRIITKGTQTYSVMDCDPSENHSKFLLS
VKEKEDSAGTRVYGVCFVDTSMGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSV
DTQKILKGSLVSCIQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLT
SESDSLGLTPGENSELALSALGGCVFYLKRCLIDQELLSQANFEEYVPVDIATAKDMSSS
SLFARTGQRMVLDGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLC
NPKSINDRLDAVEDLLAVPDKMSEVSEYLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAI
FYEELKYSKKKIADFLSTLEGFKIMNEIVEFMEEFASDFKSRVLKQLVTCKARNPDGRFP
DLSAELTRWDTAFDHNQARKTGVITPKLGFDPDYDRALEDIRALEEDLRRYLDKQRKLLG
SKSVQYWGTGKNRYQMEIPESVISRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEE
RRDAALKDCMRRLFYNFAKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPEILLPR
DNARPFLELRNSRHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTL
MRQAGLLVVMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQH
ATEHSLVLVDELGRGTATFDGTAIASAVVQELAERIQCRTLFSTHYHSLVEDYSHRGAVR
LGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEF
EKTTISLRIFRYLCQVVDGTTCDANAVRKLMAMIDRL
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagatcagccatcgccgaacgtccttctcacggtagtttcgagccgtcccagttc
tgcagcagcccgggacaacggggacggccgggccgggcccgtccctcagcgcttcccgcc
aaagccggggcggggcggggcggggcggcgcgcgggcagcgcgggtttggcgcgcagggc
ggcgcggttcccgccgcggccatgtctcggcagagcaccctgctccgcttcttccccagg
gccgccccgccgccggcggccggcagcgagccccgcagcgagccccgccgccgctcctcg
ggggagcggaacgggctgcaggccgccggcagccccccgggcggggcgggccgagcggcg
gcgcggcgcggcgagaacggcgagaagggcgcggggggcggcgcggccgccaaggccccc
agtgtctcctgtgagtattctcctggggacttggtgtgggccaagatggagggttatccc
tggtggccatgtctcatatacaaccaccccactgaaagaacaattctcagaggaaaagga
aaagccactcgtgtccatgtgcagttctttgatgacagccctacaaggggttggatcagt
gttaaatacctgaagccatataaaggttcatccgacggggagacgatgaagggaggtatg
ttttacagcacaaagcctgaaattaaaagagccatggtgctggcagatgatgccatgaag
aaggataaaatcaagaggcttgaactggcagtatgcaatgagccttcagacacagaggag
gaagaggaagaaatagaggagatgagtgaaaatgcatcaggcaacagtgaagactgcaat
agcgaggaggacgtgaaaagcaataagcgactgatgagcagggagagagctgtaaaaacc
aagagaaggagagtgttggattctgacagtgaccacgatggctctgatgtggagttcaag
cctgatgggaaagaagcagcaagcagtgaggaagccagtagtggggtggatgaaaatgag
tcttctgacacagagacggaggcagagagtgttgcagagagccccataaaagtccctgct
aaacgaaagagaagagaggtgaaaaagcctgctaaaaggagtagcttgggaaatgaatgt
tctgaaacacccaaaagagcagcaacagtctcttcagaagccaagtctaagctgacatcg
tttgcagcacctgaaagttttgaatctcaagcaaatgcttccagtggaggcactggtggc
ttctcagtgtgggaacacgagaagcttgactggctgcaagaagggaagaggagagatgcg
cacaggaggcgtcagggtgaccccgattacgacccctgtactctgtacgtgcccgaggat
tacctcaacaagtgcacgccgggcgtgcgcaggtggtggcagctcaagagccaaaacttt
gatgctgtgatttgctacaaggtcggaaagttctatgagttgtatcacatggacgcagtc
accggcgtcaatgagctgggcctgatctttatgaagggcacctgggcccactcaggtttt
ccagaaactgcgtttggccgattctccgacgtcctggtgcagaagggctacaaggtggcg
cgcgtggagcagacggaaacgcctgaaatgatggaagcacgctgcaagtccaagggccag
tccaccaagtttgacaaggtggtgcgccgggagatctgcaggatcatcaccaagggaacc
cagacctacagtgtcatggactgcgacccctccgagaaccacagcaagttcctgctgtct
gtgaaggagaaggaggactcggccgggacgcgtgtctacggggtctgcttcgtcgacacc
tccatggggaagttccatgttggccagttcccggacgaccgccactgctccaggtttagg
actttggtagctcactacacccctgtgcaggtgctgtttgagaagggcaacctgtctgtg
gacacacagaagatactgaagggctcacttgtttcttgcattcaggaagggctgacctcg
ggttcccagttctggaatgcatctaaaacactaaaagtccttcttgaggaaggatatttc
aaggagaagcagaattctgaaaatggatgttctctgccctctgtaatcaaatctctgact
tcagagagtgactccctgggattaactcctggtgaaaacagtgaattagctttgtcagct
ctcgggggatgtgtcttctatctcaaaagatgtctgattgatcaggagctgttatcacag
gcaaacttcgaggaatatgtccctgtggatattgctactgcaaaagacatgagttcaagt
agtttgtttgccagaactggccagcggatggtgctggatggagtcaccctgatgaacttg
gaagtcctgcagaatggaaccaatggaagcacagaaggtactttgttggagaggattgat
tcttgctgtacaccatttgggaagcgactcctgaaacagtggctctgcgctccactttgt
aaccctaaatccatcaatgatcgtttggatgctgttgaggacctcctggcagtgccagat
aaaatgtctgaagtcagtgagtacctcaagaaactgcctgaccttgaaagactgctcagc
aaaattcacagcattgggtcaccactcaaaagtcagaaccatcctgacagcagggccatc
ttctatgaagaactcaaatacagcaaaaaaaaaattgctgactttctgtctaccctggag
ggattcaaaataatgaatgaaattgtcgaattcatggaggagtttgccagtgacttcaaa
tccagagtcctgaagcagctggtcacctgcaaagccagaaatcccgatggccgcttccca
gacctgagtgcagagctcacaaggtgggacactgcctttgatcacaaccaggctcggaag
acaggggtgatcacccccaagctaggttttgaccccgattatgacagagcactagaggat
atcagagctctcgaggaggatcttcggaggtacctggataagcaacgcaagctgctcggg
tccaaatccgtgcagtactgggggacaggcaagaaccggtaccagatggaaatcccagaa
agtgtcatatcccgcaacctgcccgaggaatacgagctgaggtccagcaggaagggctac
aagcgctactggaccaaggagatagagaagatgctggctgcgatggtgaatgccgaggag
cgccgtgacgccgccctcaaggactgcatgaggcgcctcttctacaactttgccaagaac
agcaaggactggcagacagctgtggagtgcattgctgtgctggatgtcttgatgtccctt
gctcactacagtcaaggtggtgatggacctctgtgccgacctgaaatcctgctgccaagg
gataatgctcgtcccttcctggaacttagaaattcccgccatccatgcatcacaaaaact
ttctttggggatgattttattcccaatgacatcgtgataggcatcaaggatgaaggcagc
agcagtgaggcctcctgtgtgctggtaactggcccaaacatgggtggcaaatctactctc
atgagacaggctggtctcctggtggtcatggcccagctgggctgctacgtgcccgcggaa
gcctgcaggctcacacccatcgaccgcgtgttcacgcggctcggcgcctccgacaggatc
atggctggtgaaagtaccttctttgttgaattgagcgagacttccagcattctgcagcat
gcaacagagcattcccttgttctcgtggatgaactgggcagaggcacggccacgtttgat
ggcacagccatagcgagcgccgtggtgcaggagctggccgagaggatccagtgccggacg
ctgttctccactcactaccactccctggtggaggattattcccaccgcggggccgtgcgc
ctgggccacatggcatgtatggttgaaaatgagagtgaggatccaagccaggaaacaatt
acgttcctgtacaagttcattgaaggagcctgcccaaagagctatggcttcaatgcggca
agacttgcagatattccagaagaagtcattcagaaggggcacagaaaagccaaagagttt
gaaaaaacaaccatctcactgagaatatttaggtacctgtgccaggtggtggatggaaca
acatgtgatgcaaatgcagttcggaaactcatggcaatgattgaccggctttag
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