Taeniopygia guttata (zebra finch): 100228206
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Entry
100228206 CDS
T01082
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100228206 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tgu00536
]
100228206 (COL5A1)
Glycosaminoglycan binding proteins [BR:
tgu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100228206 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100228206
NCBI-ProteinID:
XP_030142197
Ensembl:
ENSTGUG00000005847
LinkDB
All DBs
Position
17:8162070..8298854
Genome browser
AA seq
1837 aa
AA seq
DB search
MDTHTRWKRRSWIRSCSVPAALVLLGALSLGRAAEPADLLKVLDFHNLPDGITKTTGFCT
SRRSSKEADVAYRVTKDAQLSAPTKQLYPASPFPEDFSILTTVKAKKGGQSFLISIYNEQ
GIQQIGVELGRSPVFLYEDHTGKPGPEDYPLFRGINLADGKWHRVALSVQKKNVTLVLDC
KKKITKFLDRSEHPIIDVNGIIVFGTRILDEEVFEGDIQQLLIVADPRAALEYCEHYSPD
CDTAIPDSPQSQDPNQDEYYTDGEGEGDTYYYEYPYYEDVDEAVKPETPTTKPSPPEVAA
GEKPETKEDYPAPTAPPERGNPEKQPKEDGAVDDPLVDEYNYETINEEYFTPMPYEDLNY
NEEIDPQGGLTENAVEAELPTSTVVTYNETDAAQGGDELDKDFTEETIKEYDGNYYDNYY
DRTASPDIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLVEGPPGPEGPAGLPGP
PGPTGPVGLMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFSGGGDAGSKGPMVSAQ
EAQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEAGEMGPQGPRGIQGPPGP
AGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGNRGEPGPHGPPGAPGEDGE
RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVAGMDGQTGPKGNVGPQGEPGPPGQ
QGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPPGP
QGPIGYPGPRGVKGADGVRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGP
EGPKGRSGPNGDPGPLGPAGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGTRGT
PGKPGPRGQRGPTGPRGERGPRGSTGKPGPKGNSGGDGPPGPPGERGPPGPQGPTGFPGP
KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGP
PGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGERGLPGPIGSPGLKGNEGPPGP
PGPAGSPGERGPAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGL
PGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPAGADGEPGP
RGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGP
PGADGPQGPPGGIGNPGAVGEKGEPGESGEPGLPGEVGLPGPKGERGEKGEAGPSGAAGP
PGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE
PGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGI
PGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGD
RGLPGPQGSAGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGESGLPGP
PGPPGPPGEVIQPLPIQAAKRTRRNIDASQLLDDGNADNYMDYADGMEEIFGSLNSLKLE
IEQMKHPLGTQHNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGETCI
FPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDSDGNPIGVVQMTFLRLLSASARQN
ITYNCYQSVAWHDATTNSYDKAIRFLGSNDEEMSYDNNPYIRAALDGCAARKGYQKTILE
INTPKVEQVPIVDIMFNDFGEAAQKFGFEVGPACFLG
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcacacgcggtggaaaaggcgcagttggatacggagctgctcggtgcccgct
gccttggtgctgttgggtgccctgtccctcggccgggcagctgaacccgcagacctcttg
aaggtgttagattttcataatttacctgatggtatcacaaaaaccacggggttttgcaca
agcagaagatcttcaaaagaagcagatgttgcttacagagtaacaaaagatgctcagctc
agtgccccaacaaagcagctgtatcctgcttcccccttcccagaggacttctccattcta
accactgtaaaagcgaagaaaggaggtcagtccttcttgatctcaatatacaatgagcaa
gggatccagcaaattggtgtggagttgggtagatctcctgtattcctgtatgaagaccat
acaggaaagccaggcccagaagactatcctctctttagaggcattaacctagcagatggc
aagtggcaccgagtggctctgagtgtgcagaagaaaaatgtcaccttggttctggactgt
aaaaagaaaatcaccaagttcctggaccggagcgagcatcccatcatcgacgtcaacggc
atcatcgtgttcggcaccaggatattggatgaggaggtctttgagggtgacatccagcag
ctcctgatcgtggcggacccgcgggcagccctggagtactgtgagcactacagccccgac
tgtgacaccgccatccccgactccccccagtcccaggaccccaaccaggatgaatactac
acggacggggagggagaaggtgacacttactactacgagtacccctactacgaggacgtg
gatgaagctgtcaaaccagaaacccccaccaccaaacccagccctcctgaagtggctgct
ggagagaaacccgaaaccaaggaggattatccagctcccacagcaccccctgagaggggg
aaccccgagaagcagcccaaggaggacggagcagtggatgatcccctggttgatgagtac
aactatgagaccatcaacgaggagtattttaccccaatgccctatgaggatctcaactac
aacgaggaaatcgatccccagggtggcctcacggaaaatgcagtggaagctgaactcccc
acgagcactgtcgtcacctacaatgagactgatgctgctcaaggaggggacgaactggat
aaagatttcactgaggaaaccataaaggaatatgatgggaattattatgacaattattat
gaccggacagcctctcccgacatcggccccggcatgccggccaaccaggacaccatctat
gaagggatcggtggcccccggggtgagaaggggcagaagggggaacctgccatcattgag
ccgggaatgctggtggaaggcccccctggtcctgaaggcccagcaggccttccaggacct
ccaggaccaactggacctgtgggcttaatgggtgacccaggggagaggggcccacctgga
cgcccaggtctcccaggagcagatggattgccaggaccaccagggacaatgcttatgctg
cctttccgcttcagcggaggaggcgacgctggctccaaaggacccatggtgtcagcccag
gaggcacaagcccaggctatcctgcagcaggccaggttggcactgaggggaccagcaggt
cccatgggcctgacagggcggccgggcccgatgggacccccaggcagcggagggctgaag
ggagaagctggagaaatgggacctcagggtccacgaggcatccaaggtcctcccggtcct
gcaggaaagccaggccgcaggggacgagctggcagtgacggtgcccggggaatgccaggc
cagacaggaccaaagggtgaccgaggctttgatggcttggctggtttgcctggtgagaag
ggaaacaggggtgagccaggcccccacggccccccaggggctcctggagaggatggggag
aggggagatgatggagaagttggacccagaggtctccccggagaacctggaccccgagga
ctgctgggccccaagggacccccaggacccccggggccaccgggcgtggctggcatggat
ggacaaacaggtcccaaagggaatgtgggccctcagggcgagccagggcccccaggacag
caggggaacccaggggctcagggtcttccaggtccacaaggcgccatcggtcccccagga
gagaaaggccctctgggcaaacctggtctgcctggcatgcctggtgctgatgggcccccg
ggtcatcctggcaaggaaggtcctcctggagagaaggggagtcagggtcccccaggtcct
cagggccccattggatatccaggaccacgtggagtcaagggagcagatggagttcgtggc
ttgaaaggcaccaagggggaaaagggtgaagatggtttccctggcttcaaaggtgacatg
ggcatcaaaggagaccggggggaaattggccctcctggcccccggggtgaggatgggcct
gaaggtcccaaaggtcgctctggccccaatggagatccaggtcctcttgggcctgctgga
gagaagggaaaactcggcgtgccaggactgcctgggtacccgggcaggcagggcccgaag
ggctccatcggcttcccaggattcccaggagccaacggagagaagggcacacggggcact
cctggcaagccaggtccgagggggcagcgtggtccgacgggtccacgtggggaaagaggc
cccaggggaagcactggaaaacctggcccgaagggcaactctggtggtgatggcccccct
ggtcctcctggagaaaggggaccaccagggcctcaaggaccaactggatttcctggacca
aaaggcccccctggtcctcctgggaaggatggattgcctgggcaccctggacagagagga
gaaactggtttccaaggcaagactggccccccaggcccccctggtgtcgtagggcctcag
ggtccaactggtgagactggacccatgggcgagcggggccatcccggccctccaggtccc
ccaggagaacaaggccttcctggcctcactggaaaagaaggaaccaagggggatcctggt
cctgctggcctcccagggaaggatggtccccctggattgagagggttccctggagagcga
ggcctccccggccccattggatctccagggctgaaaggcaacgaaggtcccccaggccct
ccaggcccagccggctctcctggggagcgtggccctgcaggatcagctggccccatagga
ttgccagggagacctggccctcagggacctccaggacctgcaggtgaaaaaggagctcca
ggggagaaaggtccccagggaccggctggccgggatggcatccagggccccgtgggactg
ccaggtccagcaggtcctgtgggacctcctggagaggatggagacaagggtgagatcggg
gagcctggacagaagggcagcaaaggtgacaagggggagcagggtcccccaggccctact
ggtccccaaggcccaattggtcagcctggcccagctggagcagatggagagcccgggccc
cgaggacagcaaggcctctttggtcagaaaggtgatgaaggaccccgaggtttccccggc
ccccctggccctgtgggcttgcagggcctgcctggaccacctggggagaagggagaaacg
ggtgacgttgggcagatgggcccaccaggcccaccaggacccagaggtccatctgggcca
ccaggagcagatggtccacagggtcctcctggaggaataggaaaccctggtgcagtagga
gagaagggtgaacctggggaatctggtgagcctggtctccctggggaagttggcctgccg
ggccctaaaggtgaaagaggtgaaaagggggaagcaggtccctctggtgctgctggtcca
cctggccccaaaggcccaccaggtgatgatggccccaaaggcagccctggtccagttggt
ttccctggtgaccctggtcctcctggagagcctggcccagctggtcaagacggtccccct
ggtgacaaaggtgatgatggtgaacctggacagactggttcccctgggcccacgggagag
ccaggcccctctggaccccctggaaaacggggccctcctggtccagctggtcctgaagga
aggcaaggagagaaaggagccaagggggaagctggtttggaaggacctcctgggaagact
gggcccattggtccccaaggtgctccagggaagcctggccccgatggccttcgtgggatt
cctggtccagttggtgaacaaggtctcccgggatcccctggcccagatggtcctccaggc
ccaatgggccctccgggtttgcctggtctgaaaggagactctggtcctaaaggggagaag
ggtcacccaggtttaattggtcttattggacctccaggagagcagggagaaaagggtgac
agaggtctcccaggcccccagggctcagcaggacccaaaggagagcagggtatcacaggt
ccctctggacccatcggacctccagggcccccaggattaccgggtccacctggtcccaaa
ggtgctaaaggctcatcaggtcccacaggtccaaagggtgaatcaggtcttcctgggccc
ccagggcctcctggtcctcctggagaagtcatccagcccctgcccatccaggctgccaag
aggaccaggaggaacattgatgccagccagctgctggatgatggcaatgctgacaactac
atggactatgctgatggcatggaggagatttttggctccctgaactccctgaaactggaa
atcgagcagatgaagcatcccttgggcactcagcacaacccagcacgcacctgcaaggac
ctgcagctctgccaccctgatttcccagatggtgaatactgggttgatcccaaccaaggg
tgttccagggactctttcaaagtttactgtaatttcacagctggtggagagacctgcatc
ttccctgataagaaatctgaaggagctagaattacttcctggcccaaggaaaacccaggc
tcgtggttcagtgaattcaagcgcggtaaactgctctcctacgtggactcggacgggaac
cccatcggggtggtgcagatgaccttcctgcgtctcctgagcgcctcggcccgccagaac
atcacctacaactgctaccagtcggtggcctggcacgatgccaccaccaacagctacgac
aaggccatccgcttcctgggctccaacgacgaggagatgtcctacgacaacaacccctac
atccgagcggccctcgacggctgcgcggcaaggaagggctaccagaaaaccatcctggaa
atcaacacgcccaaagtggagcaggtccccatagtcgacatcatgttcaatgacttcgga
gaagcggcacagaaatttggattcgaggtgggaccagcttgcttcctgggctaa
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