Taeniopygia guttata (zebra finch): 100230766
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Entry
100230766 CDS
T01082
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
100230766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100230766
Transcription factors [BR:
tgu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100230766
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HTH_24
Motif
Other DBs
NCBI-GeneID:
100230766
NCBI-ProteinID:
XP_030122067
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Position
2:113791828..113793522
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AA seq
402 aa
AA seq
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MSSPDAGYASSDDQAQGRCSLPIMMPAMCPWAESLSPLGEAKAKGGAAASGPSGGRSKGE
ARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLAEKRPFVEEAERLR
VQHMQDHPNYKYRPRRRKQVKRLKRVESGFLQHGLAEAAAAAAAGPGLGSEVAGGGRMCV
EGLGLAYGEQGYAAAGAGPYRDCPPLGAAFDGYGLPTPDPSPLDAAESEAPFFAAGLQEE
CALGPYGYGPHPAAAEYPAASESPSGAALRRHLPPAEALGAGGSLQGLLGCPAPLHAYYG
QCQPPGPGRGPPPPGALGQPSPPPEAAPCREQLEQLRPEELLCEVDRTEFEQYLRFACKP
ELGLPYGGHEAAAPSAPEGAGPISSAVSDASSAVYYCGYPDL
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccccgatgcgggctacgccagcagcgacgaccaggcgcaggggcggtgctcg
ctgcccatcatgatgccggccatgtgcccgtgggcagagtcgctgagcccgctgggcgag
gcgaaggcgaagggcggcgcggcggcgtcggggccgtcgggcggccggagcaagggcgag
gcgcggatccggcgtcccatgaacgccttcatggtgtgggcgaaggacgagcgcaagcgg
ctggcgcagcaaaacccggacctgcacaacgccgagctcagcaagatgctgggtaaatcg
tggaaggcgctgtcgctggcggagaagcgtcccttcgtagaggaggcggagcggctgcgg
gtgcagcacatgcaggaccacccgaactacaagtaccggccgcggcggcgaaagcaggtg
aagcgcctgaagcgggtggagagcggcttcctgcagcacggcctggcggaggcggcggcg
gcggcagcggcggggcccgggctgggcagcgaggtggccggcggcggcaggatgtgcgtg
gagggcctgggactggcgtacggcgagcagggctacgcggcggcgggcgcgggcccctac
cgggactgtccgccgctgggcgccgcgttcgacggctacggcctgccgacgccggacccg
tcgccgctggacgcggcggagagcgaggcgcccttcttcgcggcggggctgcaggaggag
tgcgcgctggggccctacggctacggcccgcacccggcggccgccgagtacccggcggcg
tccgagagcccgtcgggcgcggcgctgcggcggcacctgccgcccgcggaggcgctgggc
gcgggcgggtcgctgcaggggctgctgggctgcccggcgccgctgcacgcctactacggg
cagtgccagccgccgggcccgggccgcggcccgccgccgccgggggccctggggcagccg
tcgccgccgcccgaggcggcgccgtgccgggagcagctggagcagctgcggccggaggag
ctgctgtgcgaggtggaccgcacggagttcgagcagtacctgcgcttcgcctgcaagccc
gagctggggctgccctacggcggccacgaggcggccgcgccgtcggcgcccgagggcgcg
ggtcccatctcgtcggccgtatcggacgccagcagcgccgtctactactgcggctacccc
gacttgtga
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