Taeniopygia guttata (zebra finch): 100230939
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Entry
100230939 CDS
T01082
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgu03021
]
100230939 (SCAF4)
03041 Spliceosome [BR:
tgu03041
]
100230939 (SCAF4)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100230939 (SCAF4)
Spliceosome [BR:
tgu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
100230939 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100230939
NCBI-ProteinID:
XP_030120132
Ensembl:
ENSTGUG00000013464
LinkDB
All DBs
Position
1:18311195..18340854
Genome browser
AA seq
1088 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSATAPMAENATNNEGSPPPPAKVPSEPPQVAANSVPAVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPQKPQSPVIDNTVMAQVQAITAQLKTTAAQP
TEQKAAFTAPEQKTSFDKKLLDRFDYDDEPEAVEDAKKEDSAPSPSVSQPALTSLSFSAQ
AGWCSMPGGFPGEGMQQPVFPQLPNMDPFQQRMMGMQQDPMRHQVPLPPNGQMPGFGLLP
TPQFPPMAQPVMPPAAPVQPTFQSPFPVQAEPHLQKPHQQDVEVEQPPIQEGKRHVSDSR
KSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRRSPKSRSQERREREREKERRS
KGLPQIKAETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVH
RQDANRALQKLSRGNFKVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYIPWDKVKPEDL
ESFCEGGMLDNETLSPEWKGIPKKSENEVAQNGGAEAAHNEPVSPIPKALPVPIPVPMPA
PITVPPPQVPPHPSGPPVVGALQPPAFTAPLGIPPPGFAPGVPPPPPPPFLRPGFNPLHL
PPGFLPPGPPPPITPPVSVPHTPAVNIPNSTATGGNEDTTKESSVGNPIPTVVSGGRGNA
ESTDTSKIYGTVPPPVAPTNVPAPVTQAVPLLGTQGVAPPPPAPVVGLQTPSTGLLGARP
GLIPLQRPPGMPPPPPLPRFPMMPPRHMPPHMMHRGPPPGPGGFGMPPPHGMKTPFPPPG
HFVRPSGGPGSGGPEENRDGRQFRNDRQFTPNRDQERFGRRSFGNRVENDRERYGGREER
EHERLGSRDRRDWGRRSPERDRHRDSEERNRRSSGHRDRERDSRDRESRRDKEESRSKEK
PEVTDRAEGDKNHESHGSKMEGAELVSELTAGDAEPAGAKATPESVPEATSSLEQADKDT
GSVAEAPR
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaacgccttcaaccaagagctcttctcactgatggagatgaaacctcct
atttcccgagcaaagatgattctcatcacaaaagctgccattaaagctattaagctctac
aagcatgttgtccagattgtggaaaagtttatcaaaaagtgcaagccagagtacaaagtg
ccgggcttgtacgtcatcgactccatcgtccgccagtcccggcaccagttcggaacagac
aaggatgtctttgggccaaggttctccaagaatattactgccacattccagtatttgtat
ctgtgtccatctgaagacaagagtaaaatagttcgtgttctgaacctctggcagaaaaac
ggagtatttaaaattgaaataattcagcctctcttggatatggcagcaggaaccagtgcc
actgcacccatggcagagaatgctactaacaatgaaggctcaccgccccctccggccaag
gttccctcggagcccccgcaagtggccgcgaactcggtgcccgccgtgccgcagctgccc
agctccgatgcctttgcagctgtagcccagttgttccagacaacacaaggacaacagctc
cagcaaatcctacagaccttccaacagcctcagaagccacagtcaccggtcatagacaac
actgtgatggctcaggttcaagctattactgctcagctgaaaaccacagcagcacagccc
acagagcagaaagctgctttcacagcacctgaacagaaaacatcatttgacaaaaagctg
ctagatcggtttgactacgatgatgaaccagaagctgtggaagatgcaaagaaagaagat
tcagctccttccccttcagtgtctcagccagctttgacatctctctcattcagtgcacag
gctggatggtgctcaatgccgggtgggtttccaggagaaggcatgcaacagccagtattt
cctcagctcccaaatatggatcctttccagcagcggatgatgggaatgcagcaggatccg
atgcggcaccaggtgccgcttcctccgaatgggcaaatgccaggttttggtctcctgcct
accccccagttcccacccatggctcagccagtgatgcctccagcagcgccggtgcagcca
actttccagtctcccttcccagtccaggccgagccacacctgcagaaaccccaccagcag
gatgtcgaagtggaacagccacccattcaggagggaaagcgacatgtttctgacagtagg
aaatcaagatctagatctgcatcaaggtcccccaagaggagacgctcgcggtcgggctcg
cgttcgcgccgctcacggcaccgccgctcccgctcgcgctcccgggaccggcgccggcgc
tcgcccaagtcccgctcccaggagcggcgcgagcgtgagcgggagaaggagcgccgctcc
aaggggctgccccagatcaaggcagagaccgtcagcgtttgcagtaccacactctgggta
ggacagctggacaaaaggacaactcagcaggatgtgggaagtctcttggaggagtttggc
cccattgagtccatcaatatgataccacccagaggatgtgcctacattgtcatggtgcac
agacaagatgccaacagagccctccagaaactgagccgaggcaacttcaaagtcaaccag
aaatccatcaagattgcctgggctctgaataaaggaataaagccagactacaagcagtat
tgggatgtagaattgggtgtgacttacatcccatgggacaaagtcaaacctgaagatctt
gaaagtttctgtgaaggaggaatgctggacaacgagacccttagtccagagtggaaggga
attcccaagaagtctgaaaatgaagtggctcagaatggaggtgcagaagctgcacacaat
gaaccagtgtcacccattcccaaagctttacctgtcccaattccggttcccatgcctgca
ccaataacagtacctcctccacaggttcccccccatccatcagggcctcccgtggttggt
gcactccagccccctgctttcacagcacctttaggaattccccctcctggatttgcccct
ggggtgccgccgccaccaccgcctccattcctccggcccggcttcaacccgctgcattta
cctccaggattccttcctcccgggccaccacctcccataactcctccggtctctgtcccg
cacactccggcagtgaacatcccaaactctacagcaacaggtgggaatgaggacactaca
aaggagtcgtctgtaggaaatcccatcccaacagtagtttctggaggcagagggaatgct
gaaagtactgacacttccaaaatctatggcactgttccacctcctgtagcacctaccaat
gtccctgctcctgtcacccaggctgttccactccttggcacccagggcgtggccccgcca
ccgcccgcgcccgtggtggggctgcagactccatccacggggctgctgggcgcccggccc
gggctgatcccgctgcagcgcccgccggggatgccgccgccgccgccgctgccgcgcttc
cccatgatgcccccgcgccacatgcccccgcacatgatgcacagagggcccccgccaggc
cccggcggcttcgggatgcctcccccgcacggaatgaaaaccccgttccctccgcccggc
cacttcgtgcggcccagcggcggcccgggcagcggcgggcccgaggagaacagggacggg
cggcagttcaggaacgacaggcagttcacgcccaacagagaccaggagcggttcgggagg
agatccttcgggaaccgggtagagaacgaccgggagcgctacggcggccgcgaggagcgg
gagcatgagcggctgggcagccgcgacaggcgagactggggacgccgcagccccgagcgc
gacaggcacagggactcggaggaaagaaacaggcgctccagcggccaccgagacagggag
agggattccagggatcgggagtctcgtagagacaaggaagaaagccgcagcaaggaaaag
ccagaggtgacagacagggcggagggcgacaaaaaccacgagtcccacggcagcaaaatg
gagggcgcggaacttgtttcagaactcactgcgggagacgccgaacccgcgggcgcgaaa
gccacgccagagtcggtgcccgaggctacctcatccctggaacaggcggacaaggacacg
ggctccgtggcggaggcaccgcgctag
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