Taeniopygia guttata (zebra finch): 100231483 Help Entry 100231483         CDS       T01082                                  Symbol COL17A1 Name (RefSeq) collagen alpha-1(XVII) chain   KO K07603   collagen type XVII alpha Organism tgu  Taeniopygia guttata (zebra finch) SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen Motif Other DBs NCBI-GeneID:  100231483 NCBI-ProteinID:  XP_030132216 LinkDB All DBs Position 6:complement(23233587..23292337) Genome browser AA seq 1600 aa AA seqDB search MMSQWFLQHCPEPNSPELCIDASRSCAESCTWGTGTHMLSLDPALSLCVRTALISCLVPA TDKNTIFSSPYVTPISIETRDSLEVRGGNDMDSVTKKTRQDGSEVTERLITETVTTRLTS LPPKGGSSSGLKTSSHTGGSGVEKRSYTHGSSYVTSSGSGRLHSTSSSSSYRQAQSPSST LTKSPGSTFERKTYVNRHATYEGSSSANSSPEFPRKDFASASTRGRSQSRESEIRVRLQS ASPSGRWTELDDVKRLLKGSRSASCSPTRSPSGTLPIPKKAVVETKMVTESSQSVSGTYD TTILNTALPSYMWSSTLPAGSSLGGYHNSSSLINAMSHSTGSVFGVPNNLAPSNHTLNAG LSSSSTVFGVQNNLSPSSSSATQNATAASAAYGMKNTSQSNTMASTGVSASAGGTVLSSQ GDDILRKDCKFLLVEKEKAPAKEMELLVMTKDTGKVFSGSNTGLNGGSFVEDTLKKEKQG FSSSYATDTGLKSDANGGLKSMPKRDKETYAEIRSGDAGGAIGSAPSWCPCGSCCSWWKW LLGLLLTWLFLLGLLFGLIALAEEVRKLKSRVEDLEKINGGLLAINQGNSKIEKDVSRVD FLHGNSPSLTFPYENEESVWLMVKSRLNKEIERGYFRGERGERGEKGDMGIQGPKGDRGL PGAPGIPGPIGHAGPEGPKGQKGSMGEPGMEGPMGQRGREGMPGPRGEPGPPGFGEKGDR GAVGEPGPPGPPGPPGSTGLKGLMGSPGPQGPPGPPGLQGFRGEAGLPGAKGEKGASGPP GPKGDQGEKGARGMTGEQGSRGIPGPPGEPGAKGPVGQAGRDGQPGEKGEPGLMGMPGAR GPPGPTGDAGEPGLTGPQGPPGLPGNPGRPGAKGEPGAPGKVVSAEGSSTITLPGPPGPP GPPGPTGPPGVPGPVGPAGLPGQQGPRGEKGSPGEAVIETIRTEVSSLASQMLGDLHGRA GPPGPPGPPGESVQGPPGPRGPPGEGLPGPPGPPGRPGSSMSTSEAFFTGPPGPPGPPGP KGDQGERGPRGFTGEPGDPGLSAFSSHGERVTIQGPPGPPGPPGPKGDAGVPGAPGIPGA SRGGSRQIQGPPGPPGPPGPPGPSGGSSQEIQQYVADYLKSDNVRHYFTGAQGPPGPPGP PGLITTADGITLDYEELATRVMSYMTSSSGRYESFSSSVSTTSILYQELLDLLQREEIRQ YLIGPQGPPGPPGPGGDGMSLSLDYDELTRRFISYLSSSGMSIGLPGPPGPPGSPGISYS DLTAYLRNSEFSGIVGPPGPAGPPGPPGIPGSPGTSLEDISAYLQNVGYSSLSGVRGPPG PPGPPGPPGFSGTGILSYADITNNDEFRSELIQYLKSDEVRSYISGPPGPPGPPGPKGDS GFVSGSMSSSYQGLRASEHLHGGSLGAEGSHGGSLGTGSSYGSSMSSRSSYHASMGSDGA YDASMGTDRSFDGLLTEEESLRSAGSSRSYSNSFTGSLDYNELALRVSESLQSRGILQDL MSYTAQGPAGPPGPPGPPGISKVFASYGNITADLMDFFRTHGAIQGPPGEKGERGYPGPK GDPGPMGPPGRHGQRGPKGEKGEKGEQLYVGRRKRRTVGV NT seq 4803 nt NT seq  +upstreamnt  +downstreamnt atgatgtcccagtggttcctccagcactgcccagagccgaacagccccgagctgtgcatc gatgcctcacgcagctgtgctgagagctgcacatggggtacaggcacccacatgctctca ctggatcctgcccttagcttgtgtgtcagaactgcattaatttcctgcctggttcctgct acagataagaacactattttctcttcgccttatgtaactcccatctctattgagaccaga gacagtctggaggtaagaggtggcaatgatatggattctgtaacaaagaaaacgaggcag gatggatcagaagttactgaaagacttattacagagactgtaaccacaagactgacatcc ttgccacccaaaggagggagcagcagtgggctcaaaacatcatcccacactggagggagt ggagtggaaaagcggtcatacacccatgggagcagctatgtgacctcaagtggaagtggt agattgcattcaacatcatcatcctccagctacagacaagcccagtctcccagctctact ctcaccaaatcacctggctcaacatttgaaagaaaaacctatgtcaaccgccatgcaaca tatgaagggagctccagtgccaactcttctcctgaatttcccagaaaagattttgcatct gcctctacgagagggagaagccaaagtcgagagagtgaaatacgagtccgactgcagagc gcatctccctctggcagatggacagagttggatgatgtgaaacgtttgctgaaaggaagt cgatctgccagctgcagccctactcggtcaccatccggtacactcccgataccaaaaaag gctgtggtggagacaaagatggtcactgagagctctcagtcagtgtcagggacatatgac acaaccatactgaatactgccctcccttcatacatgtggtcctccactttgcctgctggg tcttcccttggtggataccataacagctcttccttgatcaatgccatgtctcactctaca ggatcagtttttggtgttccaaataacctggctcccagcaatcatactttgaatgcgggc ctcagctcttcctctacagtatttggagttcaaaacaacctgtctccaagctcttcttct gcaacccagaatgctacagcagcctctgcagcatatgggatgaagaacacttctcagagc aacaccatggcaagtactggtgtgtctgcctcagcaggaggaactgttttgagctcccag ggagacgacattctgcgcaaagactgcaagttcctgctggtggagaaggagaaggcacct gcaaaggagatggagctcttggtcatgacaaaggacactggcaaagtctttagtggttct aacactgggcttaatggaggatcttttgtagaagacaccttgaaaaaagagaagcaggga ttttcctcctcttatgctacagatactggcctaaaatcagatgcaaatggagggctgaaa tccatgccaaaaagggacaaagaaacttatgcagaaatacgaagtggtgatgcagggggt gcaattggatcagcaccatcctggtgtccctgtggttcctgctgtagctggtggaaatgg ctcctgggtttgcttctaacctggttgtttctccttggattgctttttggactgattgct ctggctgaagaagtgagaaagctgaaatctcgtgtggaagacctggaaaaaatcaatggt ggcctcctggcaattaaccaagggaattcaaaaatagaaaaggatgtttcaagagtagac tttcttcatggtaactcaccctccttgacctttccatatgaaaatgaagagtcagtctgg ttgatggtgaagagcagactgaataaggaaatagaacgaggctacttccgaggggagaga ggagaacgtggtgagaaaggtgacatgggaatacaaggtcccaaaggtgatcgaggactt cctggtgctccaggcattcctggtccaattgggcatgcaggaccagaaggaccaaaaggc cagaagggaagcatgggtgagcctggcatggaaggtcccatgggacaaagaggtagagaa gggatgccagggcctcgaggggagccaggaccacctggatttggagaaaaaggagacaga ggtgctgttggtgagccaggtcctccagggccacctggacccccaggttctactggccta aaaggcctgatgggttctccaggcccacaaggtcctccaggtcctcctggcctacaagga tttagaggtgaagcaggacttccaggtgctaaaggtgaaaaaggagccagtggaccccct ggacccaaaggtgatcagggtgagaagggtgctcgtggaatgacaggtgaacaaggctca agaggaatacctggacctccaggagagcccggggctaaaggacctgtaggacaagctggt cgtgatggacagccaggtgaaaagggtgaaccaggtcttatgggaatgccaggtgccaga ggccctccaggacccactggagatgctggagagccaggtcttacaggacctcaaggaccg ccaggacttccaggcaacccaggccgaccaggggctaaaggagaacctggagctccagga aaagtcgtaagtgcagagggttcatcaactattactctgccaggcccaccaggtcctcca ggcccacctggccccactggtcccccaggtgttccaggtcctgttggaccagctggtctc cctggacagcaaggtccacggggtgagaaaggatccccaggtgaagctgtgatagaaacc atcagaacagaagtctcatcattagcatctcaaatgctgggagatttacatgggcgagca ggacccccaggtccccctggaccaccaggtgaatctgtacagggacctcctggacctcgt ggtcccccaggagaaggattgccaggacctccaggcccaccagggagaccaggatcatcc atgtccacctcagaagcattcttcacaggcccaccaggtccaccaggaccaccaggccct aagggagaccaaggtgaacgaggtccacggggattcacaggagaaccgggtgatcctggc ctttcagcattctcctcccacggtgaaagagtcaccatacagggaccccctggcccacct ggcccaccaggaccaaaaggtgatgcaggtgtcccaggtgcacctggcatcccaggagca tctcgaggtggctccagacaaattcagggacccccaggacctcctgggccacctggtcct ccaggcccaagtggaggttcatctcaggagattcagcagtatgtggctgactacctgaag agtgacaacgtcagacattatttcactggtgcccaaggcccaccgggccctccaggccca cctggacttatcaccactgcagatgggattaccttggattatgaagagctggctacccgt gtcatgagctatatgacaagctcttcaggtcgctatgagtcgttttctagctccgtatcc actacatccattttgtaccaagaacttctggacctgctgcaaagagaagaaattcgtcag tatctcattggacctcagggcccaccgggacctcctgggccagggggagatggaatgtct ctgtcactggattatgatgagctgaccaggaggtttatcagctacttgtcaagttctggg atgagcattggactgcctggaccacctgggcctccagggtcacccggtatatcttacagt gacctgacagcttacctgcgaaactctgaattcagtggcattgttgggccccctggtcct gcaggccctccaggacctccagggatccctggatcaccaggcacctctctggaggacatc tctgcctaccttcaaaatgttggatactcttccctttctggagttcggggcccacctggc cctcctggccctccaggaccaccaggtttctctggaactggcatcctatcctatgctgac atcaccaacaatgacgagttcaggagtgagctgatccagtacctgaagagtgatgaagtt cgaagctacatctcaggaccccctggcccccctgggccaccgggacccaagggagacagt ggctttgtgtctgggtctatgtcttcatcataccaaggcttacgagcttctgagcacttg catggaggatcccttggtgctgagggctcccacgggggctcactgggcacaggcagctcg tatggcagctccatgagcagcagatcctcttaccatgcctccatgggcagcgatggcgct tacgatgcctccatgggcacagacaggtccttcgatgggctgctgacagaggaggaatca ctcagatcagcagggtcgagcagatcctacagcaactccttcactggttccctggattac aacgagctggcactccgtgtgtcagagagcctgcagagccgaggtattctccaggacctg atgtcttacacagcacagggacctgcaggtcccccaggccctcctggtccccctggcatc agcaaggtctttgcatcctatggcaatatcactgcagacctcatggacttctttagaaca catggtgccatccaggggccacccggtgaaaagggagagaggggttatcctggacccaaa ggtgaccctgggccaatgggcccaccaggacgacacgggcaaaggggaccaaaaggagag aagggagagaaaggtgaacaactgtatgttggcagaagaaaaagaagaactgttggtgtt taa

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