Taeniopygia guttata (zebra finch): 100232633
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Entry
100232633 CDS
T01082
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100232633 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgu03021
]
100232633 (PCF11)
03019 Messenger RNA biogenesis [BR:
tgu03019
]
100232633 (PCF11)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100232633 (PCF11)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100232633 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
100232633
NCBI-ProteinID:
XP_030124674
Ensembl:
ENSTGUG00000012944
LinkDB
All DBs
Position
1:complement(33178665..33199789)
Genome browser
AA seq
1695 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSNIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTGQSETKGNKTAQAEKQNSAKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRSTEKKE
KEEHKTCEHRLVGSRNKVINGAVQKQDGTTEESEKQGGKQGRSSSRKRSRSRSPKARSPS
THSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSSKRNVK
QEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEESKNSQQ
NDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKK
ANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLSDAELT
YYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECDQAKAKRGVQFDRKEPF
AERSRRHSPVSGTTRPFAENVSPLESRRRLEDQRATKGARGSDPYDSWGESDEFRDTLRQ
QGKSTAEFQKTDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEKAPFPE
SPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSSRIDGP
AGQAALRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGSLRFEGPPGQVGGGGP
LRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPMGPRGQ
PGGGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPMGPHGP
SGGGLRFEGPHGPSGGGLRLDGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAGPRFDG
CHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPASRFDL
PLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFDGSPGP
NFNGPAGPGAQNFPLRAAGHYFEEKGLQGPQYGNFSNMAMGSNQVSLMSAQPGPYGQGQQ
YLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQANETSS
QPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVY
ADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVL
KTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSC
YEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPDDTPPACAEET
TPASTEIKTEPEESV
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcacagcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcacta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctagtgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcag
ctgataaggcaacaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtgtctctcagtgttcagcag
ggatcatctaatatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcaaactgctgtgcaatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtgaacagggatcctcgacttaataggatg
ggtcaacattcttctcatactaaagatcagtctcacaggaaagaattttcaccgagtgtg
actggtcagtctgagaccaagggaaacaaaacagcacaggctgaaaaacagaactcagca
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttaaaaaataaactacccgatactaaagacagtgaa
agcactaaggtttctgacatcagtaagcgggatccaagactgaaaagacatcttcaagat
aagtcagaggggaaagaagaggaggtcaaagaaaagaggagaagtacagaaaagaaggag
aaagaggagcataagacatgtgaacatagactggtggggagcagaaataaagtgattaac
ggtgctgttcagaaacaagacgggactacagaggagtcagaaaaacagggtggaaaacaa
ggaagatccagtagtagaaaacggtcacggtcacgctctcctaaggcaagatcaccatct
acacattctccaaaaagacgggagaggagatcacctaaaagaagacttcggagtttatct
cctacttcatcaactcctaaaattggaaagatacgtcagataggccctaagcagtctcat
gttgaagaaggcacacaagcagcaagagatgaaagaaattctagtaagagaaatgttaaa
caagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaaagaccccaagagaca
gccacccagcattctgcaaaagcttctccagatccaaaggagaatgcagaaaactggcag
ggatccaaatcaggcaagaggtggaaatctggttgggaagaaagtaaaaactcacagcag
aatgatgaacaccaagcacttgttaaatcccctcaccaaagacatcgggaaaactggcct
gctggtaaaggaattctatcaccccgagcaccaaagcagcagcaccggttaagtgtggat
gccaatttacagattcccaaagaattgacatctgcaagtaaaagggaattacttaagaag
gctaatgaccgcttaacatctggagaaataacacaagatgagtttctcatggtagctcat
cagatccgacagctgttccagtatcaggaaggaaagcacagatgtaatgtctgggatagt
cctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcggatgcagaattaaca
tattatgaacataaagccaaactaaaaaggacacaagttcagcattcattgtcaaggctt
gatctgttggatcctgatgatattttggattatcatatacctgatgcattgctttctgga
atagaatgtgaccaggcaaaagccaagcggggagtacagtttgatagaaaagaaccattt
gcagaaagatcaaggagacactctcctgtaagtggcactacaagaccttttgctgaaaac
gtgtcaccgcttgagagtcgacgaagacttgaagaccagcgtgctactaaaggagcgaga
ggttctgatccttatgacagctggggagaatcggatgaatttagagatactctcagacaa
caggggaaaagtacagcagagttccagaaaacagatggagatgcactctgtaggtttgat
aatcgtgaagaaagacagcttcttgggcaagctggtgttcgagaggagccaaggtcgcca
ttcactgaacgtttcaaaagagctaggtatgaagatccagagaaagcaccatttccagaa
agtccaggatcaaggtttggaggtattgaagcaaagcagaggataagtgcactgatggaa
gacagacctctgtttgatggctcacctagaccgactgctgcaagggttggggtagatgga
caaggcagtccttttgttgatggtcctgctgctggttcaagttccagaattgatgggcca
gctggacaggctgctttgagatttgaggggcctttggtggggacaggtgcatctcagttt
gatggaccactggcaggagcagggggagctggagccttaaggtttgatgggccaccaggg
cagctagcagggtccctgagatttgaaggaccaccaggccaggttggtggaggaggtccg
ctgcggtttgagggacctcttgggcctttgaggtttgagggacctgcagggcagcctgta
ggtggtgctagatttgaaggtcctggagttggtctcaggtttgagggtcctcatggtcag
ccttcaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcggggtcaa
ccagggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcatggtcaa
ccagggggtagcctcaggtttgaggggccacatttacagccattggggccccatggacaa
cttggaggtggcctcagatttgaggggccacatggtcagcccatggggccacatgggcca
tcaggtggtgggctcaggtttgaggggccacatggaccatcgggcggtgggctgagactg
gatggaccacgtggtcagccgggtctaggccccaggttgattgatggaccagtacaccag
ggggctggtggacttagatttgatggtcctcttggtcgggctggtccaagatttgatggc
tgtcatggagctggatttgatggtcagcctggacagctgtctctcctgcaaagatttgat
ggaattcatggacagcctggtccaaggttggcacctggccaacaggcacaagcaagattt
gaaacagccatacctcaaagatttgatggacctcaccagccagcctctaggttcgacttg
ccccttggccttcagggtgcacgttttgaaaatgtagctaaccatcctgcctcaagacta
gaaatgtcaccatatggacaaggtggtccgtttgttgaacatcctggccagggctacaat
ggaccagctcatggaatgcagttccagagacctgatatatttgatggttcacccggacca
aatttcaatgggccagctggcccaggagcacagaacttcccactgagagcagctggacat
tacttcgaagaaaaaggtctccagggtcctcagtatggaaatttcagtaatatggcaatg
ggaagtaatcaggtttctctcatgtctgctcaaccaggaccttatggccaaggtcagcag
tatttgccaaatcctggaagttttgtccagaaccctgcaggagccctttcccattcttat
cctgataaccaccttggacaggttgatgttaatgaattgtttgctaaactgctgaaaaca
gggatcctcaaattgtctaaaactgattccacttcagcacaagcaaatgaaacatcgtcc
cagccaactgctgaagaagaagatgatgatcagaatgaagatcagaatgttccagacctc
actaacttcatagttgaagaacttagacagcgttatgatagtgttataaatcgactgtac
actggaattcagtgttactcctgtggaatgagattcactacttcacagacagatgtttat
gcagatcatttagattggcattatcgccagaaccggacagaaaaagacgttagcagaaaa
ataacacacaggagatggtactacagtttaacagactggattgaatttgaagaaatagca
gatctagaggagcgtgctaaaagccagttctttgaaaaagctcatgaagaggttgtgttg
aaaacacaggaagctgcgaaagagaaggagtttcagagtgtcccagctggaccagctgga
gcagtggagagctgtgaaatttgccaagaacaatttgaacagtattgggatgaggaagag
gaagagtggcatctgaagaatgctatcagggtagatgaaaagatttaccatccatcttgt
tatgaagattaccagaatacatcatcatttgattgcacaccgtctcccagcaagactccc
tcagaaaatccactaaatataatgttggacattgttaaacaagaaacagaagagtcctgt
gactcacctaaaatcaaagaagaacctgatgacacccctcctgcctgtgcagaagagacc
acacctgcatctacagaaatcaaaacagaacctgaggagtctgtttaa
DBGET
integrated database retrieval system
