Taeniopygia guttata (zebra finch): 101233280
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Entry
101233280 CDS
T01082
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
Organism
tgu
Taeniopygia guttata (zebra finch)
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
101233280
NCBI-ProteinID:
XP_030112040
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Position
27:2845281..2852234
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AA seq
941 aa
AA seq
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MPSVLSQPPPPLDLLPISRQLLLPSPPSHPFWHLLLTLAPFLWFPSPWAGRTAGDRAAWV
LSTRGCGPWVRGGPGACRGPPITAGAVPGPRDQTAQASGTSQGPPSWAAGPRGSGMGSST
PLRLLRTLCIVSALARCLQPATAQWFSLGSEDTTPDPGTSPVPPSPDGEEDTDASVEPMG
KLLLSKPPLPAAPKRRDQLSRGAAKGSGRAPQRTRGQHRPTAAPEIFEGSAVEEEFLQIQ
TTAKGLPRRVPDTDPTLQLHNISGCVCPVRPGPPGPPGPKGEKGDRGFPGERGQPGFLGE
RGKSGSPGQPGHQGPRGPPGPPGPPGPPGPPGAWGARGPPVPAALPERSENEQLGVSSPA
GNPGPPGPPGLPGMPGPPGYPGHDGPQGAPGREGKPGPPGPPGAMGPPGFPGAEGLPGSP
GSAGPDGPPGAPGLPGPQGPPGMPGHEGPPGPPGSASPPGKPGLRGEPGFPGPKGEKGEY
GLPGMPGSPGRTGEPGSPGMPGPMGPPGPPGDSRCDSRHAGHRGLAGLPGPKGEKGDPGE
PGCCYGEHGCKPGHLPFPSTGSQPGSWGAINRYQTDGKDEPEIYGAIIPHGLQGPPGNPG
PPGPPGPPGPPGLLYLNRMHPVHAQPPCKQPAPADRSWPSDAGAPQTEPSDSRADLRRQT
WVFKSKELMVKASSAVPEGSLVYVREGSNAFLRTPTGWSRLLLEDPKWVLAGDDPSASTP
QYQEVKRVQPRGPNTLSLLQSPTDSLIQKEEEQGLPQILPTTTAPRIPSLRLAALNVPLW
GDMSGIRGADLQCYRQSQEAGLHGTFRAFLSAPSQDLLSIVKRTDRTLPIVNLKGQLLAK
SWSSLFGGQSGAVLQGPIYSFNGRNVLADPLWPHRLAWHGSTPRGGHARRWDCQGWRSSG
TAEGMAAALGEGQLLAGQRHNCSAPLAVLCIEVAFPYRHMW
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgccctctgttctcagccagccccctcctccactggatttactccccatttccaggcag
cttctcctccccagccctccctcgcatccattctggcatctcctcctcaccctggctccc
ttcctgtggttcccctctccctgggctggcaggacagccggtgaccgggctgcgtgggtg
ctcagcacccgcgggtgcggtccgtgggtgcggggcgggccgggggcgtgtcgggggccg
ccgataacagcgggcgccgtgccggggccgcgggaccagacggcgcaggcgagtgggacg
agccaaggacccccatcctgggcagcggggccccgaggcagcggaatggggtccagcacc
ccgctgcgactcctccgcaccctctgcatcgtctcggcgctggccaggtgcctgcagcct
gccacggcccagtggttttccctgggctcagaggacaccaccccggatccaggcaccagc
cccgtgccccccagcccggatggggaggaagacacagatgccagcgtggagcccatgggg
aagttgctgctgagcaaacctcctctgccagcagcccctaaacgccgggaccaactctcc
aggggggcagcgaaggggtcaggccgtgccccacagcgcacacgaggccagcaccgaccc
acagccgccccggagatctttgaggggagcgcagtggaagaggaattcctgcagatccag
accacggccaaggggctgccccggcgggtcccggacacggacccgaccctccagctgcac
aacatctccggctgtgtctgccccgtgcgccccggcccacctggccctcccggcccaaag
ggagagaaaggtgaccgagggttccctggagagagaggccagcccggattcttaggagag
agagggaagtccggcagcccaggacagccaggtcaccagggtcctcggggccctccgggt
cctccgggacccccggggcccccaggacccccgggcgcctggggagcccggggcccaccc
gtgcctgctgcactccctgagaggtcagagaacgagcagctgggagtctccagccctgca
ggaaacccaggacccccaggtccccccgggctgcctggcatgcccggaccccccggctac
ccaggccacgatggcccccagggggctcctgggcgggagggaaagccaggacccccaggc
cctccaggagccatggggccacctggtttccctggggctgaaggacttccagggtctcca
ggctcagctggaccagatggaccccctggggcaccaggactcccagggcctcagggtccc
cccggcatgcctgggcacgaaggaccccctggtcccccaggatctgcatcaccccctggc
aaaccagggctccgaggggagccaggattcccaggaccaaagggtgagaagggcgagtat
gggctgccaggcatgccagggagccctggccggactggagagccagggtccccgggcatg
cccggtcccatggggccaccaggaccaccaggggactccaggtgcgactcacgccacgct
ggacaccgtggattggccgggctgccgggccccaagggagaaaagggcgaccctggagag
ccggggtgctgctatggggaacacgggtgcaaaccagggcacctccccttccccagcact
ggcagccagcccggctcatggggggccatcaacaggtaccagacggatgggaaagatgaa
ccagagatttatggagcgatcatccctcatggtcttcaaggtccccctgggaaccccggt
ccccctgggccccccggcccccctggcccaccaggtctcctctacctcaacaggatgcac
cccgtgcatgcccagccgccctgcaagcagccggcacctgcagatcgcagctggccatca
gatgctggtgcccctcagacagagccgtcggactcccgcgctgatctccggcgccagacg
tgggttttcaagtccaaggagctgatggtgaaggcgagcagtgctgtgcccgaggggagc
ctggtctatgtgcgggaagggagcaacgccttcctccggacccccactggctggagccgc
ctgctgctggaggatccgaagtgggttttggctggtgatgacccttctgcctccacccca
cagtaccaggaggtgaagagggtgcagccaagaggtcccaacacgctgtcactcttgcag
tctccaacagactccctgatccagaaggaggaggaacaagggctgccccagattctgcca
accaccacggccccacggatcccatctctccgtctggctgccctcaacgtgcccctgtgg
ggtgacatgagcgggatccggggcgctgacctgcagtgctaccggcagtcacaggaggcc
gggctccacggcaccttccgggccttcctgtcagcccccagccaggacctgctgtccatc
gtcaagcggacagacaggaccctccccatcgtcaacctgaaggggcagctgctggccaag
tcctggagctccctttttgggggtcagtctggtgctgtcctgcagggtcccatctactcc
ttcaacgggcgcaacgtcctggcagatcccctctggccccaccggctagcctggcacggc
tccacgccacggggcggccatgcccgccggtgggattgccagggctggcgcagctctggc
acggccgagggcatggctgctgccctgggcgagggccagctgctggctggccagcgccac
aactgctccgcaccgctggccgtgctctgcatcgaggtggcttttccttaccggcacatg
tggtga
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