Taeniopygia guttata (zebra finch): 105760944 Help Entry 105760944         CDS       T01082                                  Name (RefSeq) collagen alpha-1(I) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism tgu  Taeniopygia guttata (zebra finch) Pathway tgu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tgu00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     105760944  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tgu00536]     105760944 Glycosaminoglycan binding proteins [BR:tgu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    105760944 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Motif Other DBs NCBI-GeneID:  105760944 NCBI-ProteinID:  XP_032607320 LinkDB All DBs Position 17:2376922..2459116 Genome browser AA seq 1789 aa AA seqDB search MRGGALPLLCALSLSLSLSLSLSLCPAALAAPEPGSGLDSDEVNLLDKITLHAQDLSNVS FGYDHSKCRILEIGQYATLNIPTREAFGDRFADELSVLLKLRYSLKEDTSLVTILSHRSH VLFQIRINPYALVFVTTRRRHYEFPVSFLGDGHWHQVALSISLERLELHVDCRLVDRVSW SNYFGMGVNTEGLIIIGGIIESFEIPFKGALQQLTFVMGDPAAAAEQCHSYKSTCPGSSS LHRAPWELSTAWPEVPKETNEIQDSSTQDSRLTSSDSAPGPPWPWEDAQGTLSLQPDGSA LASPSAHELPSAEEEEEEEEEEEEGSLSIEDEGFELLNSTYNKITGPGRPALRRSSAASI KPPRAAKKERGSDPREENVTTEKLSGDTGVWRQLPPGKPHLDPKVSPPAHRGAAPKGNVP RGPLRAGAVLGVPQPPLGAGQPGLWVAHGCVKPGPPGLPGPPGLPGCPGRRGLVGPKGDK GFPGAMGRTGPPGEPGPAGTPGVPTIVLWRNSREDWQSFMQSSFYQLLHAGWPRKPGAPG PPGHPGKTGAPGACGAPGEPGQKGQRGYPGEPGLQGLPGRVGYPGSDGFPGLDGKPGPWG LPGEQGLQGFQGDRGLAGDKGEEGFLGDPGAAGDKGEKGVKGEKGENGLPGPAGLQGLAG LKGAMGFQGPAGPAGEGGSVGPPGPAGPMGERGQPGSVGCRGTNGSQGEMGPPGMAGPPG PKGPQGLQGRRGPPGPRGSQGAAGLEGSAGPKGVRGADGAPGVRGQLGQEGPGGFLGLPG AKGSQGEQGCRGPAGAKGDSGAKGGKGPRGAQGAKGPPGTRGQGGLQGFPGPRGAAGPQG PDGEEGQIGPAGLNSSEGPKGCQGADGPKGAPGPRGARGRVGQRGLVGVPGLPGSRGVPG AEGAEGKPGTQGHAGIVGSPGRRGPLGFAGLPGSRGHAGTPGSIGSPGKPGPDGEPGCSG PKGLPGKPGLEGPQGPVGTYGYPGPAGDRGRLGRRGDKGERGAQGAPGFPGKAGAKALPG PPGPRGAPGSQGRTGDPGPRGLPGLPGVPGTRGLAGIPGNPGLGGERGTPGAAGAAGPPG YPGREGPKGREGPAGMRGEKGEVGAPGAAGVRGLDGEQGPPGAAGAEGQLGPKGEQGEAG TCGAPGIRGSPGEPGDEGTEGPPGQPGKQGKEGDTGDTGDPGEPGPRGQKGNAGPRGIPG IPGPGAATGEIGGKGQKGEKGREGLLGQGGVTGAAGPAGARGWLGPPGLRGPPGLDGPEG EKGDPGPRGVDGPAGAAGFQGQAGDDGVKGDDGKAGPVGSQGAQGLAGAPGLRGYSGHEG ARGVVGTKGQPGRQGTLGPPGEAGATGLSGTEGLVGAKGEPGEPGKPGQMGSPGQSGPKG RKGCKGDKGDTGQEGDRGVPGEAGRRGKRGKMGQQPPRGPWGHKGYPGDKGLPGPQGPQG PYGIPGLKGIKGEPGPKGHKGEKGSKGDLGQQGDDGFKGKPGPHGVPGRPGPKGKQGDTG PPGPQGHPGIPGTPGSSGPKGLRGFPGLPGPRGTPGLPGLAGPPGPSGPALMLSQEELQH LIYSSNYLNYTVVWALLDSLSQELQALVEHPNGTKTNPATTCKELLLAHPGLPDGQYYID PNQGSPQDALRAFCNFTAGGETCIAPVHNQVPIKAWLSTYSSENTFEWFSTLPGGFLLEY AGASPVQLRFLRLHSHRASQKVSYSCRAAPERGRPQPHKEIRFLADSREHSYAASLQGCL LDNESSISDTIFQFSTEQLWLLPLRDLAVFHNGDTSHQFGFTVGPVCFS NT seq 5370 nt NT seq  +upstreamnt  +downstreamnt atgcgcggcggggcgctgccgctgctctgcgccctgtccctgtccctgtccctgtccctg tccctgtccctgtgcccggcggcgctggcggcccccgagccgggctcggggctggactca gatgaggtgaacctgctggacaaaatcactctccatgcccaggacctcagcaatgtttcc tttggctacgaccacagcaagtgcaggatcctggagatcgggcagtacgcgaccctcaac atccccaccagagaggcctttggggacaggtttgcagacgagctgagcgtgctgctgaag ctcaggtactccctgaaggaggacaccagcctggtgaccatcctcagccaccgcagccac gtgctcttccagatcaggattaacccctacgccctggtctttgtcaccacgagaaggaga cactacgagttcccagtgtccttcctgggcgatgggcactggcaccaggtggctctcagc atctccctggagaggctggagctgcacgtggactgccggctggtggacagagtgagctgg tccaactattttgggatgggagtgaacaccgaggggctgatcatcattggaggcatcatc gagtccttcgagatcccctttaagggcgctctccagcagttgaccttcgtgatgggagac ccagcagctgctgctgagcagtgccacagctacaagtcaacttgcccaggctcctccagc ctccacagggccccgtgggagctctcaacagcctggccagaggtgccaaaggaaaccaat gaaatccaggattcatctactcaggattccagactcaccagttcagattcggccccgggg ccaccttggccatgggaggatgcccagggcaccctcagcctccagcctgatgggagtgcc ctggcttccccctctgctcacgagctgccatcagctgaggaggaggaggaggaggaggag gaggaggaggagggcagcctttccattgaggatgaaggctttgagctgctgaactccacc tacaataaaatcactgggccgggcaggccagcactcaggagaagctcagcagcctccatc aaacccccccgagcagccaagaaggagcgtggctctgacccccgggaggagaacgtcacc acggagaagctgtcgggggacaccggcgtgtggcgacagctcccacctggcaaaccccac ctggaccccaaagtgtccccaccagctcatcggggggctgctcccaaaggaaacgtcccc agaggtcccctgagggcaggggcagtgctgggtgtcccacagcctccccttggagcggga cagcccggattgtgggtggcacatggctgtgtgaagccgggaccaccggggctgccggga cctcctgggctgccgggctgtcctggcagacgggggctggtgggacccaaaggagacaaa ggattcccgggggccatggggaggacgggccccccaggtgagcctggccctgctggcacc cccggtgtgcccaccattgtcctctggaggaactccagggaggactggcagtccttcatg caatcatcattttaccaactcctgcacgcgggctggccgagaaaacctggagctcctggg cccccaggacaccctgggaaaacaggagcacctggagcctgcggagcaccgggagagccg gggcagaaaggccagcgggggtacccgggggaacccgggctccagggcttgccaggacgt gtgggataccctggctctgatggtttccctggcttggatggcaaacctgggccctggggg ctgccaggggagcagggcctccagggcttccagggtgaccgagggctggctggggacaag ggagaagagggtttcttgggggaccctggagcagctggggacaaaggagagaagggagtg aagggggagaagggagagaatgggctgccaggtcctgcagggctccaggggctggcgggg ctgaagggtgccatgggcttccagggccctgcagggccagcgggagaaggtggctcagtg ggtcccccgggccctgctggtcccatgggagagcggggccagccaggatccgtgggatgc cgaggcaccaatggctctcagggggaaatgggccctcccgggatggccggaccccccggc cccaagggaccccagggtttgcagggcaggcgtggcccccccggccccaggggctctcag ggcgcagcagggctggagggatccgcaggtcccaaaggagtcagaggtgcagatggagcc cctggggtgaggggacagctgggacaggagggccctgggggtttccttggcctgccaggt gcaaaaggctcccaaggagagcagggctgccgaggtccggctggagccaagggagattcg ggagccaaaggaggcaagggcccacgaggagcacaaggagcaaaaggccctccaggaacc cggggccaggggggcttgcagggcttccccggcccccgaggggctgcagggccacaggga ccagacggggaagaaggtcagattggccctgcagggctgaacagcagcgagggacccaag ggatgccaaggagctgatggccccaagggagccccaggaccacggggagcccggggccgt gtggggcagcgtgggctggttggagtccctgggctgcctggctcgcggggcgtgccggga gcggagggcgcagaaggaaagcctggtacacagggccacgcagggatcgtgggcagccca ggcaggaggggaccactgggatttgctggtttgccagggagccgtgggcacgccggaact cctggatccataggctctccaggaaagcctggacctgatggagagccgggttgctcgggc ccaaaggggctgcctgggaagcctggcttggaggggccacaaggacctgtgggcacctat ggctatccaggacctgctggagaccgcgggaggttgggacgcaggggagacaagggagaa aggggagctcaaggtgccccaggatttccaggaaaagctggtgcaaaggccctgccgggt ccccctggtcctcgtggtgctccaggctcccagggcaggacaggtgacccaggtcctcga gggctcccagggctgcctggtgttcctggcacgcgagggctggctggcattcctgggaat cctggcttgggcggggaaagaggcactcctggagcagcgggtgctgctggcccgcctggc tacccgggccgggaaggtccaaagggacgtgaagggcctgcagggatgagaggagagaag ggtgaggtgggagctcccggggcagccggagtccgcgggctggatggggagcagggacca ccaggagcagcaggagcagagggtcagctggggcccaagggtgagcagggagaggcagga acctgtggagctccaggcatcagagggagccctggggagccaggggacgaggggacagag gggccaccaggacagcctgggaagcaaggcaaggagggtgacactggtgacactggagac ccgggtgagccaggaccacggggacagaagggcaatgctggtcccaggggcattcctgga attcccggtccaggagctgccacaggtgaaattggagggaaaggccagaagggagagaag ggccgagaaggtttgctgggccagggcggtgtcaccggagctgcaggacctgccggagcc agaggatggttgggaccgccaggactccgaggtcctcccgggctcgatggtcccgaggga gagaagggagatccagggccacgaggcgtggatggacctgctggggctgcaggattccag ggacaggctggagatgatggagtaaagggagatgatggcaaggctggcccggtgggctcg cagggggctcagggactggcgggtgcccccgggctccggggctacagcgggcacgaggga gccagaggcgtggtgggcaccaagggccagccaggccggcaggggactctcgggccgccg ggcgaagctggagccacggggctgagtggcactgagggcctggtgggtgcaaaaggggag ccaggcgagccgggaaaaccaggacaaatggggtctcctggacaatctggtcctaaagga cggaaaggctgcaaaggagataagggtgacacggggcaggaaggggacagaggggtccca ggagaagctggcagacggggcaagcgaggcaagatgggccagcagcccccgcggggtccc tggggacacaagggctacccaggtgacaaaggacttccagggccccagggaccccaggga ccctatggcatcccagggctgaagggcatcaaaggagagcctggaccgaaaggacacaag ggcgaaaagggcagcaagggtgacctgggccagcaaggggatgatggcttcaagggcaag ccaggaccccacggtgtccctgggaggccaggacccaagggaaagcagggtgacactggc ccccctggccctcagggacaccctggaattcccgggaccccgggctcgtctggacccaaa gggctgagaggcttcccgggcctgccaggcccccggggcacaccgggattgccgggtctg gctggcccccctggtcccagcgggcctgcactgatgctgtcccaggaggagctgcagcac cttatttactcctccaactacctgaattacaccgtggtctgggctctgctggactccctg agccaggagctccaagcccttgtggagcatcccaatggcaccaaaaccaacccggccacc acctgcaaggagctgctgctggctcaccccggcctgcccgatgggcaatactacatcgac cccaaccagggcagcccccaggacgcgctgagggccttctgcaacttcacagctgggggg gagacctgcatcgcccccgtccacaaccaggtccccatcaaggcttggctgagcacctac agctctgagaacacctttgagtggttcagcaccctgcccggggggttcctgctggaatac gcgggggccagcccggtgcagctgcgcttcctgcgcctgcacagccaccgcgccagccag aaggtctcgtactcctgcagagcggccccggagcgcggccggccccagccccacaaggaa atccgcttcctggccgactcccgggagcacagctatgcggccagcctgcagggctgcctg ctggacaacgagtcctccatcagcgacaccatcttccagttcagcacggagcagctgtgg ctgctgcccctgcgggacctggctgtcttccacaacggcgacacctcgcaccagtttggt ttcacagtcggaccagtttgcttcagctga

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