Taeniopygia guttata (zebra finch): 115492884
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Entry
115492884 CDS
T01082
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
tgu
Taeniopygia guttata (zebra finch)
Pathway
tgu03015
mRNA surveillance pathway
tgu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115492884 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115492884 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgu03021
]
115492884 (SYMPK)
03019 Messenger RNA biogenesis [BR:
tgu03019
]
115492884 (SYMPK)
Transcription machinery [BR:
tgu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115492884 (SYMPK)
Messenger RNA biogenesis [BR:
tgu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115492884 (SYMPK)
U7-dependent histone pre-mRNA processing factors
115492884 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
SCD
Adaptin_N
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
115492884
NCBI-ProteinID:
XP_032602126
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MAGAQGGLSPRPSEEGPGSDGRSTSERVVDLLNQAALIGNEGKITILKQVQELIINKDPT
LLDNFLDEIIAFQADKSIEVRKFVVGFIEEACKRDIELLLKLVANLNMLLKDENVNVVKK
AILTMTQLYKVALQWMVKSKVISELQEACWEMMSSMASDIILLLDSDNDGIRTHAIKFVE
GLIVTLSPRTADSDVPKRHENDVSLERIPRDHPVIKYSVLWEEGKAALEQLLKFMVHPAI
SSINLTAALGSLATIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSV
LRHPSSGDFQPQITTLLVDLGTPQAEIARSMPSPRDARKRPRDEPDAALKKMKIEPPLGE
DDEDKDLEAPAVAVAKAAGAVTVPSDTDITAEFLQPLLTPENVANLVLISMVYLPEAMPA
SFQATYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKLLREEPKEEKVAKPDAVV
IKRRLSALGQGQAIAVLGAHGSAAGLPDETPQAKRRPEPILPTTQPRLAGAGGRKKVFRL
GDVLKPLSEVQVEKLKVGAVRRILRSERAVAASGAAQARVKILASLVTQFEVPLKGEVLS
FILDDVRGRLDLAFAWLFQEYNAHLARGGRGGPGGPGGPGGLERYDECLIGLLAGLQEKP
DQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRELIFRRPSRQFQYLHVL
LDLSSHEKDKVRQQALQFIKRMYEKEQLRAYVEKFALNYLQLLVHPNPPSVLFGADKDTE
VAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGMGMN
SPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNG
LEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGASAVSPLNPGELLIALHNIDSSKC
DMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQALTMYPRLGGFVM
NILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVVLQLPPPQLAAVFDKCPELREPLLS
HVRALTPHQQAHIPLSTMAILEATTRHEPEGTPGEEKPPKRPSDDDPKPKGGGPAAPGGG
PASGSPPPEGPPDLGGSDLEPPSIFISVAEDEESSGGGGDASPPDAALDPPKDPPPGTEP
PQAPPPPGEAPPPGSPPSSEPPPPGTQSPEGLPGVPEVPSEG
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggccggggctcagggggggctcagcccccgccccagtgaggaggggcccggcagcgac
ggcaggagcacctcggaacgggtggtggatctgctgaaccaggcggcgctgatcgggaac
gagggaaaaatcaccatcctgaaacaggtgcaggagctgatcatcaacaaggaccccacg
ctgctggacaacttcctggatgaaatcatcgccttccaggccgacaaatccatcgaggtc
cggaaattcgtggtgggattcatcgaggaggcctgcaaaagggacatcgagctgctgctg
aagctcgtggccaacctgaacatgctgctcaaggacgagaacgtcaacgtggtcaaaaag
gccatcctgaccatgacccagctctacaaggtggccctgcagtggatggtgaagtccaag
gtgatcagcgagctgcaggaggcgtgctgggagatgatgtcctccatggccagcgacatc
atcctgctgctggactcggacaacgacggcatccgcacgcacgccatcaagttcgtggag
gggctgatcgtcaccctgtccccccgcacggccgactccgacgtgcccaagcggcacgag
aacgacgtcagcctggagcgcatcccgcgggaccaccccgtcatcaagtacagcgtgctg
tgggaggagggcaaggcggcgctggagcagctgctcaagttcatggtgcacccggccatc
tccagcatcaacctgacggccgcgctcggctcgctggccaccatcgcccgccagcggccc
atgttcatggccgaggtcatccaggcctacgagaccctccacgccaacctgccgcccacg
ctggccaagtcccaggtgagcagcgtgcggaagaacctgaagctgcacctgctgagcgtc
ctgcgccacccgtcctcgggcgacttccagccgcagatcaccacgctgctggtggacctg
ggcacgccgcaggccgagatcgcccgcagcatgcccagcccccgcgacgcccgcaagcgc
ccgcgcgacgagcccgacgccgccctcaagaagatgaagatcgagccacccctgggagaa
gatgacgaggacaaggacctggaggcgccggcggtggccgtggccaaagcggccggagcg
gtcaccgtcccctcggacaccgacatcacggccgagttcctgcagccgctgctgaccccc
gagaacgtggccaacctggtgctgatcagcatggtgtacctgcccgaggccatgcccgcc
tccttccaggccacctacacgccggtggagtcggcgggcaccgaggcgcagatcaagcac
ctggcccgactgatggccacccagatgaccgcggccgggctggggccaggcgtggagcag
accaagctgctgcgcgaggagcccaaggaggagaaggtggccaagccggacgcggtggtc
atcaagcggcgcctgtcggcgctgggccagggccaggccatcgccgtgctgggcgcccac
ggctcggccgcggggctgccggacgagaccccccaggccaagcgccggcccgagcccatc
ctgccgaccacgcagccgcggctggcgggcgcaggtggcaggaagaaggtgttccgcctc
ggggacgtgctgaagccgctcagtgaggtgcaggtggagaagctgaaggtcggcgccgtg
cgccgcatcctgcgctccgagagggccgtggcggccagcggggccgcccaggcccgggtg
aagatcctggcctcgctggtgacgcagttcgaggtgcccctcaagggcgaggtgctgtcc
ttcatcctggacgacgtccggggccgcctggacttggccttcgcttggctcttccaggag
tacaacgcccacctggcccgtggtggccgcggtggccccggtggccctggtggccccggt
ggcctggagcgctacgacgagtgcctgatcgggctcctggccgggctgcaggagaaaccc
gaccagaaggacgggatcttcaccaaggtggtgctggaggcgccgctgatcaccgagagc
gccctggaggtgatccgcaagtactgcgaggacgagagccgcacctacctgggcatgtcg
acgctgcgggaactgatcttccggcggccgtcgcggcagttccagtacctgcacgtgctg
ctggacctcagctcccacgagaaggacaaggtgcggcagcaggcgctgcagttcatcaag
cgcatgtacgagaaggagcagctccgcgcctacgtggagaaattcgccctcaattacctt
cagctcctggtgcaccccaaccccccctccgtgctcttcggcgccgacaaggacaccgag
gtggcggcgccctggaccgaggagaccatcaagcagtgcctgtacctgtacctggccctg
ctgccccacaaccacaaactgatccacgaactcgcctccgtctacaccgaggccatcgcc
gacatcaagcgcacggtgctgcgcgtcatcgagcagccgatccgcgggatggggatgaac
tcgccggagctgctgctgctggtggagaactgccccaagggcgccgagacgctggtgaca
cggtgcctgcacagcctgaccgacaaagtgccgccctcgcccgagctggtcaagcgcgtc
cgggacctttaccacaagcggctgccggacgtccggttcctcatccccgtcctcaacggg
ctggagaagaaagaggtgatccaggcgctgcccaaactcatcaaactcaaccccatcgtg
gtcaaggaggtcttcaaccgcctgctggggacgcagcacggtgacggcgcctcggccgtg
tcccccctgaaccccggggagctgctgatcgccctccacaacatcgactcctccaagtgc
gacatgaaatccatcatcaaagccaccaacctgtgcttcgcggagcggaacgtgtacacc
tcggaggtgttggcggtggtgatgcagcagctgatggagcagagcccgctgcccatgctg
ctgatgcgcacggtgatccaggccctgaccatgtacccccgcctgggcggcttcgtcatg
aacatcctctccaggctcatcatgaaacaggtgtggaagtacccgaaggtgtgggagggc
ttcatcaagtgctgccagcgcaccaagccgcagtccttccaggtggttctgcagctgccc
ccgccccaactcgccgccgtcttcgacaagtgcccggagctgcgcgagcccctcctcagc
cacgtgcgcgccctcacgccccaccagcaagcgcacatccccctgtccaccatggccatc
ctggaggccaccacgcgccacgagcccgaggggacacctggagaggagaagcccccgaag
cgcccgagcgacgacgaccccaaacccaagggggggggtcccgcggccccgggggggggt
cccgcctcggggtcccctccccccgagggccccccagatttgggggggtcggacctggag
cccccctcgatcttcatcagcgtcgccgaggatgaggagagctcgggggggggaggggac
gcgtccccccccgacgccgccctcgacccccccaaggacccccccccgggcacggagccc
ccccaagccccgccccctcccggcgaggccccgccccccggcagccccccctcctcggag
ccgcccccccccggcacccaaagccccgaggggctcccgggggtccccgaggtgccctcc
gagggctga
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