Taeniopygia guttata (zebra finch): 116807642
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Entry
116807642 CDS
T01082
Name
(RefSeq) LOW QUALITY PROTEIN: transcription intermediary factor 1-beta-like
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tgu01001
]
116807642
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tgu04121
]
116807642
Enzymes [BR:
tgu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116807642
Protein kinases [BR:
tgu01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
116807642
Ubiquitin system [BR:
tgu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116807642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
116807642
NCBI-ProteinID:
XP_032601890
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MSEPEAAAPGGGPGAKGAALPEPPGPLELCGACRERLSPRREPRLLPCLHSVCRGCLGTA
PGGDAQGEGSAGSCWGVLGAFSPVVPAVCSSQPLDEAIRQQRSVLVALLQRLADKHAAVQ
RCAKELRAFMRGLSEAQQRLQVEVKLAVLQVMRELNKRSKALVCDVQRAAEGRQERLQRQ
QRALSRAQRQQEHVLRFGARALDSPHGAALLLSRRLIHSQLLRALGVPLEPLEPQGEMRF
QWDPQGWTRSAQSFGAIISEPPLPPSLSPPPPAAPPTAQGPPTLSPPPQLSPPCLEPAAT
ESPETAPSPGNGVTGGRTRNPGSSPRRRSSLRRCSLSGGVPPGPRRAPAPQGAAGLERLE
LDLELDPAQPPVFRIFPGLGSRSSRGQRGQRAHRGQRGQRGRCSHTESSLSRRSSRSRPS
GTLGTLGTSNPWGCCRLPRGIRALSWAPPPVPGVPGVPGVPGVPGVSCCRVCGQAGAVVM
CDRCQRCFHLHCHLPALQDVPSPEWTCLLCQELPPPLPEPPLQTEPGPPLKLSPQDQQRC
EFVLLGLLCHEPCRPLQRLCSSPDGRDAMDLTLMRARLQEKLSPPYRSPRSSPATAGACC
ASFHRLTEDKADVQSILGLQRFLESRLSAAFGDQKFSRLLLDPEEALEVPPGS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccggaggcggcggcaccgggcggcggccccggggcgaagggagcggcgctg
ccggagccgccggggccgctggagctctgcggcgcctgccgggagcgcctcagcccccgg
cgggagccgcggctgctgccctgcctgcactccgtgtgccgcggctgcctgggcaccgcg
ccgggcggcgacgcgcagggtgagggcagcgctgggagctgctggggggtactgggggcg
ttttcccccgttgttcccgccgtgtgcagctcgcagccgctggacgaggccatccggcag
cagcgctcggtgctggtggcgctgctgcagcgcctggcggacaaacatgcggcggtgcag
cgctgcgccaaggagctgcgcgccttcatgcgcggtctgtcggaggcgcagcagcggctg
caggtggaggtgaagctggccgtgctgcaggtcatgcgggagctcaacaagcgcagcaag
gcgctggtgtgcgacgtgcagcgcgcggccgaggggcggcaggagcggctgcagcggcag
cagcgcgcactgagccgggcgcagcggcagcaggagcacgtgctgcgcttcggcgcccgc
gccctcgacagcccccacggcgctgcactgctgctgtcccggaggctgatccactcgcag
ctgctccgcgctctgggggtgccgctggagccgctggagccgcagggggagatgagattc
cagtgggacccgcagggctggaccaggagcgcccagagcttcggtgccatcatttcggag
ccgcccctccccccctcgctgagccctcccccgccggccgccccccccaccgcgcagggt
ccccccacgctgtcacctcccccccagctgtcacctccctgcctggagccagcggccacc
gagagccccgagacggcccccagccctggaaacggcgtcaccggagggaggacgaggaac
cctggcagttccccccggaggagaagttcgttaagacgctgctcattaagcggaggggtc
cccccggggcccaggagagccccggctccccaaggagccgcgggtttggagcgcctggag
ctggacctggagctggacccggcgcagccgcccgtgttccgcatcttcccgggcctcgga
agcaggagttcaaggggacagaggggacagagggcacaccggggacagcggggacagcgg
ggacggtgcagccacacagagtcctccttgtcaaggaggagcagcaggagtcgcccatcg
gggacattggggacattggggacatcaaacccgtggggctgctgccgcctcccccggggg
atccgggccctgtcctgggctcctcccccggtcccgggggtcccgggggtcccgggggtc
ccgggggtcccgggggtgtcgtgctgccgcgtgtgcggccaggccggggccgtggtgatg
tgtgaccgctgccagcgctgcttccacctgcactgccacctgcccgcgctgcaggacgtg
cccagccccgagtggacgtgtttgctgtgccaggagctgcccccgcccctgccggagccg
ccgctgcagacggagccgggcccccccctcaagctgagcccccaggaccagcagcgctgc
gagttcgtcctgctgggactgctgtgccacgagccatgccggcccctgcagcgcctctgc
agctccccggacggccgcgacgccatggacctgacgctgatgcgggcgcggctgcaggag
aagctgagccccccctaccgcagcccgaggagttcgcccgcgacggctggcgcctgctgc
gccagtttccaccgcctcaccgaggacaaggcggacgtccagtccatcctggggctgcag
cgcttcctggagagccgcctcagcgccgccttcggggaccagaagttctcccggctcctg
ctggaccccgaggaagctctggaggtgcctccaggctcctga
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