Thalassococcus sp. S3: CFI11_11035
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Entry
CFI11_11035 CDS
T05844
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thaa
Thalassococcus sp. S3
Pathway
thaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFI11_11035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thaa03400
]
CFI11_11035 (mfd)
Enzymes [BR:
thaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFI11_11035 (mfd)
DNA repair and recombination proteins [BR:
thaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFI11_11035 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBF31751
UniProt:
A0A4P6MK37
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All DBs
Position
2191724..2195188
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AA seq
1154 aa
AA seq
DB search
MTSSAHITVGGAPEGFDARLILQEIDKSGAPVLHIARDDKRLAAMQAALAFFAPDMPVLT
FPGWDCLPYDRVSPNPDISAARMATLAALCHGMPSRFVLLTTLNAATQRVPARALLREAA
FTARVGGRVDEGALRGFLVRMGFTQSPTVMEPGDYAIRGGIIDVYPPGEGGPVRLDLFGD
VLDGARRFDPATQRTTEKLEVVELAPVSEVILDDAAITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHQGVEHWLPFFHEKLETLFDYLPDAAVTLDDQVTPARIARWESVADQYETRRLA
LQSKGRIDTVYKPAPPDLLYLDEAAWDGATDGRRVLGFSALQQATGPGVIDAGGRIGRNF
APERQQENISLFGALATHVKARLDQGPVVIASYSEGARERLTGLIEDEGLAEVIPVPNAT
RIGKNGLHLAVWALEHGFEAPGLTVISEQDVLGDRLIRAPKKRRKAENFLTETQSLTPGD
LVVHVDHGIGRYHGLEVVTAAGAAHECLLLEYAEKSRLYLPVENIELLSKYGHDEGLLDR
LGGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPILDPPPGSWDAFSARFPYQETDD
QLRAIGDVIDDLTSGQLMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQ
HAASFKERFRGFPLEVRQLSRFVSAKDAQATRDGIARGTVDIVIGTHALLAKGIRFQNLG
LLVIDEEQHFGVAHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL
AIRTYVSEFDAVTLREALLREHYRGGQSFYVVPRISDLPEIEEFLREQLPELSYVVAHGQ
MAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRTKLTPQAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGYELYQSMLEEAIAKIRSGEMEGLSEADDQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSSLSTKVELEGFAAELIDRFGKLPREVNTLMLIVRIKAMCKKAGIAKLDGGPK
GATIQFHNDKFASPQGLVEFIQGQNGLAKVKDNKIVVRRDWRQDADKIKGSFAIARDLAE
KVVAERKKKKAKTA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgacatcctccgcccatatcactgtcggcggcgcgcccgaaggcttcgacgcgcgcctg
atcctgcaggagatcgacaaatccggcgcgccggttcttcacatcgcgcgcgatgacaaa
cgccttgcggctatgcaggcagcccttgccttctttgcgcctgacatgccggtgctgacc
tttccgggctgggattgcctgccttacgaccgtgtctcgcccaaccctgatatttcggcg
gcgcggatggcaacactggccgcgctctgccacgggatgccatcgcgtttcgtcctgctg
acgacgctcaatgcggcaacccaaagggtgcccgcacgggcgctgttgcgcgaggcggcg
tttacggcgcgggtcggtggccgcgtggacgaaggcgcgttgcgcggctttctggtgcgc
atgggctttacccaaagccccacggtcatggagcccggcgattatgccatccggggcggc
atcatcgacgtctatccgccgggtgagggcggtccggttcggctggatctcttcggcgac
gtcttggacggggcgcgccgcttcgatcccgcgacccagcgcacgaccgagaagctggaa
gtcgtggaactggcccccgtctccgaggtgatcctcgacgacgcggccatcacgcggttc
cgccagaactaccggatcgaattcggagccgccggcaccgacgatccgctttacgaggct
gtgagcgcaggccgcaagcatcagggcgtcgagcattggctgcccttctttcatgagaag
ctggaaacgcttttcgactaccttcccgatgccgcggtgacgctggacgatcaggtcaca
cccgcccgcatcgcgcggtgggagagcgtcgccgaccaatacgagacacggcgtctggcc
ttgcagtccaagggccggatcgacacggtctacaagcccgcgccacccgatctgctctat
ctcgatgaggccgcgtgggacggcgcgacagacggccgtcgcgttctgggcttttccgcg
cttcagcaggccacgggaccgggtgtcattgacgcaggcgggcggatcggacgtaacttc
gcgccagagcgacagcaggaaaacatcagccttttcggggcattggcgacccatgttaag
gctcggctggatcagggcccggtcgtcatcgccagctattccgaaggcgcaagagagcgt
ctgacaggcctcatcgaggatgagggactggccgaggtgatcccagttccaaatgccaca
cgcattggcaagaacgggctgcatttggcggtctgggcgctggagcatgggtttgaggcg
ccgggcctcacggtgatcagcgaacaggacgtgctgggcgaccgcctgatccgcgcgccc
aagaaacgtcgcaaggccgagaatttcctgacggagacacaatcgctgacgccgggcgat
ctggtggttcatgtggatcacggcatcgggcgctatcacgggctggaagtggtcactgcg
gcaggcgcggcgcatgagtgtctgctgctggaatatgccgagaaatcaaggctgtacctg
ccggttgagaatatcgagctgctgtcgaaatacggccatgacgaagggctgctggatcgc
ctgggcggtggggcctggcaagccaagaaggccaagctgaaggaacgcattcgcgagatg
gccgaccgcctgatccgcgtcgcggcggagcgcgccttgcgcaaggcgccgatcctcgac
ccgccgccgggctcatgggacgcgttttcggcgcgctttccctaccaggagaccgacgat
caattgcgcgccatcggcgatgtgatcgacgatctgaccagcggtcagctgatggaccgc
ctcgtctgcggtgacgtgggctttggcaagacagaggtggcgatgcgcgcagccttcgtg
gccgcgatgtccggcgttcaggtcgccgtgatcgcgcccacgacgctgctggcacgccag
catgcagcgtccttcaaggagcgtttccggggctttccgcttgaggtgcggcagctttcg
cgctttgtctcggccaaggacgcgcaggccacccgcgacggcatcgcccggggcacggtg
gatatcgtgatcggcacgcatgcgcttttggccaagggtatccggttccagaacctcggc
ctgctggtcattgacgaggagcagcatttcggtgtggcgcataaggagcggttgaagcag
ctccgttcggacattcacgtgctcacgctgaccgcgacgccgatcccgcgcacgctgcaa
ctctcgctttcgggtgtgcgggacctgtcgatcatcggcacgcctcccgtggaccgtctg
gccatccgcacctatgtgagcgagttcgacgcggtcacgcttcgcgaagcgctgctccgc
gagcattaccggggcgggcagagtttctacgtcgttccccgcatttcggacctgccggag
atcgaggagttcctgcgcgagcagttgcccgaactgtcctatgtcgtggcccatggccag
atggcggcgggtgagctcgacgaccgcatgaacgctttctatgatggcaagtatgacgtc
ctgctggccacgacaatcgtggagagcgggctggatatcccgacggcaaacacaatgatc
gtccaccgcgcagacatgtttgggctggcgcagctttaccagatccggggccgggtcggc
aggtcgaagacgcgcgcttatgcgtatctgacgacgaagccgcgcaccaagctgacgcca
caggccgagaaacgtctgcgcgttctgggctcgcttgacacgctgggtgcgggtttcacg
ctggcttcgcaggacctcgacattcgcggcgcgggcaacctgctgggcgaagagcagtcg
ggccagatgcgtgatgtggggtacgagctttaccagtcgatgcttgaggaggcgattgcc
aagattcggtcgggcgagatggagggcttgtcagaggccgacgaccaatgggccccgcag
atcaatctgggcgtgccggtcctgatccccgaagattacgtgcccgacctggacgtgcgg
ctggggctttaccggcggctgtcgtcgctcagcaccaaggttgagctggaaggctttgcg
gctgagctgatcgaccggttcgggaaattgcccagagaggtcaataccttgatgctgatc
gtgcgcatcaaggcgatgtgtaagaaagccggtatcgccaagctggacggcgggccgaaa
ggggccacgatccagttccacaacgacaaattcgcctcgccgcagggattggtggagttc
atccagggccagaacgggctggccaaggtgaaggacaacaagatcgttgtgcggcgcgac
tggcgtcaggatgcggacaagatcaagggttccttcgcaattgcccgcgatctggcggag
aaggtcgtggcggagaggaaaaagaagaaggccaagaccgcttag
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