Thalassospira marina: CSC3H3_08575
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Entry
CSC3H3_08575 CDS
T05224
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thac
Thalassospira marina
Pathway
thac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSC3H3_08575 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thac03019
]
CSC3H3_08575 (rnr)
03016 Transfer RNA biogenesis [BR:
thac03016
]
CSC3H3_08575 (rnr)
Enzymes [BR:
thac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CSC3H3_08575 (rnr)
Messenger RNA biogenesis [BR:
thac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSC3H3_08575 (rnr)
Transfer RNA biogenesis [BR:
thac03016
]
Prokaryotic type
tRNA degradation factors
CSC3H3_08575 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AUG52756
LinkDB
All DBs
Position
complement(1885472..1887862)
Genome browser
AA seq
796 aa
AA seq
DB search
MANNNEDNIPFPTKEQILEFVEMSPTPVGKREIARAFNIRGAAKIELKKMLKDLKFGGDV
VAGRKRFNKPGRLPPVEVLEITGLDEHGEVLARPNIWNEPYDPPVIYVKSSRRGSNGPSA
PGIGDKILAKLRYTGKNTYDASVMRLLGSGPQRILGIFRPNQREGRVVPTDRKDSGEIAV
PLDDHPGLETGALVLTELLPGKHFGLRKGRIVEVLGNINEPKSISLVAIHARGIPFEFPP
EVELQARESKATPMGNRTDLREIPLVTIDGEDARDFDDAVWAEADSDPENPGGWHVMVAI
ADVSWYVRPDDALDREAVKRGNSCYFPDRVVPMLPFELSNGWCSLVPHEDRGCMAVEMWL
NAKGQKLRHKFCRGMMNSAARLTYNQVQRAMDGTPDDITAPLLDTVIRPLYGAYNAFLTA
REKRGVLELDVPERKIELNAKGEIIAVAPRARFDSHKLIEEFMIAANVCAAEELERLKQP
CMYRIHDAPSEEKLEALREFLEGAGYNLRPGSVVKPRDFNQILQLAKDTPEAELINTVVL
RSQSQAMYSPDNIGHFGLALNRYAHFTSPIRRYADLLVHRALIAGLHLGEGALRPQDGER
FEQLGEDISGTERRAAMAERDSVDRYVAAYMADRVGAELPGKISSVTHFGLFVTLHETGA
DGLVPISTLPDDYYVHDAINHCLVGENRGKTFRLGDDVVVRVADADAATGSLSLRLADHA
DITARDLIERPRGRRTGPPRGKRSPGERNDRHGAKPGFRASAKKADGKKSAGKKTTPKKQ
RKLRAANRAANPPKSS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
ttggcgaacaataacgaagataacattcccttcccgaccaaagagcagatccttgaattt
gtcgagatgagcccgacgccggttggaaagcgcgaaattgcccgcgctttcaatatccgt
ggcgcggccaagatcgaacttaaaaagatgctcaaggatttgaaattcgggggggacgtc
gttgccggacgcaaacggtttaacaaacccggtcgcctgcccccggtcgaagtacttgaa
atcaccgggctggacgaacatggcgaagtcctggcacggccgaatatctggaacgagccc
tatgacccgcctgtcatttacgtgaaatcatcacggcgtggcagcaacggccccagcgcg
cctggcattggcgacaagatccttgccaagctgcgttacaccggcaaaaacacctatgac
gccagcgttatgcgcctgctgggcagtggcccgcagcgcattttgggcattttccgcccc
aatcagcgcgaaggccgtgttgttccgaccgaccgcaaggatagcggcgaaatcgccgtg
ccgttagatgaccatcctggccttgagactggtgcacttgtgctgacggaacttctgccg
ggcaaacattttggcctgcgcaaaggccggattgtcgaggttctggggaatatcaacgaa
cccaaatccatcagcctggttgccattcatgcccgtggtatcccgtttgaatttccgccc
gaagtcgaacttcaggcgcgggaatccaaggcaacaccaatgggcaaccgcacagatctg
cgcgaaatcccgcttgtcaccattgacggcgaagatgcgcgcgattttgacgatgccgta
tgggccgaagccgatagtgacccggaaaatcccggtggctggcatgtcatggtggcgatt
gccgatgtgtcctggtatgtgcgccccgacgatgcccttgaccgtgaagcagtgaaacgc
ggcaatagctgctatttccctgatcgcgttgtacccatgctgccgttcgagctttcaaac
ggctggtgttcgctggtcccgcacgaagatcgcggctgtatggccgttgaaatgtggctg
aatgccaagggccagaaactgcggcacaaattttgccgtggcatgatgaattctgccgca
cgcctgacctataaccaggtgcagcgcgcaatggatggcacgcctgacgacatcaccgca
ccgctgcttgatacggtgatccgcccgctttatggcgcctataacgcctttcttaccgca
cgtgaaaaacgcggtgttctggaacttgacgtgccggaacgcaagatcgagctgaatgcc
aagggtgaaatcattgctgttgccccgcgcgcacgctttgacagccacaagctgattgaa
gaattcatgatcgcggccaatgtgtgtgcagccgaagaacttgaacgcctgaaacagccc
tgcatgtaccgtatccacgatgcacccagcgaagaaaagctggaagcattgcgcgagttt
cttgaaggtgcaggctataacctgcgtccgggttcggttgtgaaaccccgtgatttcaac
cagattttgcaactggccaaagacacgccagaagccgaactgatcaacacggtggttttg
cgcagccagtcccaagccatgtatagccccgataatatcggccattttggcctagcgctg
aaccgttatgcccatttcacatcgccgatccgccgttatgccgaccttctggtgcatcgc
gcgctgattgctggtttgcatctgggtgaaggcgcgttgcgcccgcaggatggcgaacgg
tttgaacagcttggcgaagatatttccggcactgaacgccgtgctgccatggcagaacgt
gattcggttgaccgctacgtggccgcctatatggccgatcgcgtcggggccgagctgccg
ggcaaaatttccagcgtcacgcattttggcctgtttgtgacactgcatgaaaccggggcc
gatggcttggtgccgatcagcaccctgcccgatgattattacgtccatgacgcaatcaat
cattgtctggttggtgaaaatcgcggcaagaccttccgtctgggtgatgacgttgttgtg
cgtgtcgccgatgccgatgccgcaaccgggtctctatcgctgcgtctggcggatcatgcc
gatattaccgcgcgtgacttgatcgaacgcccgcgtggccgccgcaccggcccgccgcgt
ggcaaacgcagccccggcgaacgcaatgaccgccacggtgccaaacccggttttcgtgcc
agtgccaaaaaagccgatggtaaaaaatcggccggcaaaaaaaccacgccgaaaaaacag
cgtaaattgcgcgctgccaaccgtgcggccaatccgcccaaatcatcctga
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