Thermobifida halotolerans: NI17_022815
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Entry
NI17_022815 CDS
T08032
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thao
Thermobifida halotolerans
Pathway
thao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NI17_022815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thao03400
]
NI17_022815 (mfd)
Enzymes [BR:
thao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NI17_022815 (mfd)
DNA repair and recombination proteins [BR:
thao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NI17_022815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
SBP_bac_11
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UOE19512
UniProt:
A0A399FZT2
LinkDB
All DBs
Position
complement(5187344..5190928)
Genome browser
AA seq
1194 aa
AA seq
DB search
MSLNGLLSVVTGDPALNRAIETARGGRDPHLDIVAPPAARPFVVAGLASDAPVGAGRPIL
AVTATEREASDLSSALGSLLPADSVALFPAWETLPHERLSPRSDTVGQRLAVLRRLAHPD
PSDPLTAPLRVVVAPVRAVLQPLVAGLGDLTPVRVRTGDSVELDEVVQALVDAGYARVDL
VEKRGDIAVRGGILDVFPPTEEHPLRLEFWGDSVEEIRYFQVADQRSITGSDRFGGDAGA
GLFAPPCRELLLTDTVRERARVLAAEHPALADVLGKLAEGVTVEGMEAFAPVLADRMELL
LDLLPEGTHIVGCDPERIRTRAQELVATSQEFLDASWINAASGGAAPIDLGGSAYQSIAE
LRSRADQLGLPWWTVTPFDPGVSATAEEDDSVLVGASAADAYRGDTERAIADVKSWLHDR
WRVVLLTPGQGPAERLTSMLRDAGLGTQLRDSLPEPPDPAVATVTTGLIEHGFVWRSVRL
VVLTETDLAGQRSSTRDMRRMPSRRRGGVDPLQLKPGDYVVHEQHGIGRYIEMVSRSVQG
ATREYLVIEYAPSKRGQPGDRLFVPTDQLDEVTRYVGGDAPALSKMGGAEWTKTKNRARK
VVREIAGDLIRLYSARQASPGHAFAPDTPWQRELEDAFPYVETPDQLAAIEEVKRDMEKS
VPMDRLICGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLVQQHLSTFTERYASFPVT
VRPMSRFQTDADIERTREGMLSGDVDVVIGTHRLLSPETRFKNLGLVIIDEEQRFGVEHK
EALKRLRTQVDVLAMSATPIPRTLEMGLTGIREMTTILTPPEERHPVLTFVGPYDEKQIA
AAVRRELMREGQVFFVHNRVATIDRVAATLSRLVPEARVAYAHGQMNEQQLERVMVDFWE
KNFDVLVSTTIVESGLDVPNANTLIVDRADNYGLSQLHQLRGRVGRGRERAYAYFLYPPD
KPLSETAHERLATVAQHTETGAGMYVAMKDLEIRGAGNILGTEQSGSIAGVGFDLYVRMV
GEAVRELKGGQDAAEEVETRVELPIDAHIPHDYVPGERLRLEAYRRISEVAGEDDIAAVR
EELVDRYGEPPQPVDNLFAVARFRVLARSAGLTDVVLQGSQVRFAPVELRESQQLRLRRL
YPKSILKNATHTLLVPVPKAGGIGGKQLRDRELLRWCSELVEAIFEPGRKRPQG
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaatggacttctctccgtcgtcaccggcgacccggccctgaaccgggcgatc
gagaccgcccgcggcggccgcgatccccacctcgacatcgtcgcgccccccgcggcgcgt
cctttcgtcgtggccggactcgcctccgacgcccccgtgggcgcgggacgcccgatcctg
gccgtcaccgccacggaacgtgaggcctccgacctgagcagtgccctcggttcgctgctg
cccgccgactccgtggcgctgttccccgcctgggagaccctgccgcacgagcgcctgtct
ccccgctccgacaccgtggggcagcgcctggcggtgctgcgccgcctggcccaccccgac
ccctccgacccgctcaccgcgccccttcgggtggtcgtcgcccccgtccgcgccgtcctg
cagccgctggtggccgggctcggcgacctcacaccggtccgggtgcgcacgggcgactcc
gtcgaactggacgaggtggtccaggcgctggtcgacgcgggatacgcacgcgtcgacctg
gtggagaagcgcggcgacatcgccgtgcgcggcggcatcctcgacgtgttcccgcccacc
gaggaacacccgctgcgcctggagttctggggcgactccgtcgaggagatccgctacttc
caggtcgccgaccagcgttccatcaccgggtcggaccgcttcggcggcgacgccggggcc
ggactgttcgcgccgccctgccgggaactgctgctcaccgacaccgtgcgggaacgcgcc
cgcgtcctcgccgccgaacatccggcgctcgccgacgtcctgggcaagctcgccgaaggc
gtcacggtcgagggcatggaggcgttcgccccggtgctcgccgaccgcatggaactgctg
ctggacctgctgcccgagggaacccacatcgtgggctgcgaccccgagcgcatccgcacc
cgcgcccaggaactggtcgccaccagccaggagttcctcgacgcgtcctggatcaacgcg
gcctccggcggtgcggcccccatcgacctgggcggctccgcctaccagtcgatcgccgaa
ctccgctcgcgcgccgaccagctcggcctgccgtggtggaccgtcacccccttcgacccg
ggtgtctccgccaccgccgaggaggacgactccgtactcgtcggagcgtcggccgcggac
gcctaccggggcgacaccgagcgcgcgatcgccgacgtcaagtcctggctgcacgaccgg
tggcgggtcgtgctgctcacccccgggcaggggccggccgaacggctgacgtccatgctg
cgcgacgcgggcctgggcacgcagttgcgcgactccctgcccgaaccgcccgaccccgcc
gtggcgacggtcaccaccggactgatcgagcacggcttcgtgtggcgctcggtgcgcctg
gtggtgctcaccgagaccgacctcgccgggcagcgctcctccacccgcgacatgcgccgg
atgccgagccgccgccgcggcggcgtcgatccgctccagctcaaacccggcgactacgtc
gtgcacgagcagcacggcatcggccgctacatcgagatggtcagccgcagcgtccagggc
gccacccgcgagtacctggtcatcgagtacgcgccctccaaacgcggccagcccggcgac
cggctgttcgtgcccaccgaccagttggacgaggtcacccgctacgtcggcggcgacgct
cccgccctgtccaagatgggcggcgccgagtggaccaagaccaagaaccgggcgcgcaag
gtcgtccgggagatcgccggcgacctgatccggctgtactcggcgcggcaggcgtcgccg
gggcacgcgttcgcgccggacaccccctggcagcgggaactggaggacgccttcccctac
gtggagacgcccgaccagctcgccgcgatcgaggaggtcaagcgcgacatggagaagtcg
gtgcccatggaccggctgatctgcggcgacgtcggctacggcaagaccgaggtggcggtg
cgcgcggccttcaaggcggtgcaggacggcaaacaggtggcggtgctggtgcccaccacc
ctgctggtccagcagcacctgtccacgttcaccgaacgctacgcgtccttcccggtcacg
gtccggccgatgtcgcggttccagaccgacgccgacatcgaacgcacccgcgagggcatg
ctcagcggcgacgtcgacgtggtgatcggcacgcaccggctgctctcccccgagacccgg
ttcaagaacctggggctggtgatcatcgacgaggagcagcggttcggcgtcgagcacaag
gaggcgctcaagcggctgcgcacccaggtggacgtgctggcgatgtcggccactcccatc
ccccgcaccctggagatggggctcaccggcatccgcgagatgaccacgatcctcaccccg
cccgaggagcggcacccggtgctcaccttcgtcggcccctacgacgagaagcagatcgcg
gcggccgtccggcgcgagctgatgcgcgagggccaggtgttcttcgtgcacaaccgggtg
gccacgatcgaccgggtcgccgccacgctgagccgcctggtacccgaggcgcgcgtggcc
tacgcccacggccagatgaacgagcagcagctcgaacgggtgatggtcgacttctgggag
aagaacttcgacgtcctggtctccaccacgatcgtggagtcgggtctggacgtgcccaac
gccaacaccctgatcgtggaccgggccgacaactacggcctgtcgcagctgcaccagctg
cgcggccgggtggggcgcggacgggagcgcgcctacgcctacttcctgtacccgccggac
aagccgctcagcgagaccgcccacgagcggctggccacggtcgcccagcacaccgagacc
ggcgcgggcatgtacgtggcgatgaaggacctggagatccggggcgcgggcaacatcctg
ggcaccgagcagtccggcagcatcgcgggcgtgggcttcgacctgtacgtgcgcatggtc
ggcgaggcggtgcgcgagctgaagggcggccaggacgcggccgaggaggtcgagaccagg
gtcgagctgcccatcgacgcgcacatcccgcacgactacgtgccgggggagcggctgcgg
ctggaggcctaccgcaggatctccgaggtcgcgggcgaggacgacatcgccgcggtccgc
gaggagctggtcgaccgctacggcgagccgccgcagccggtcgacaacctgtttgcggtg
gcgcggttccgggtgctggccaggagtgccggactcaccgacgtggtcctgcagggcagc
caggtccggttcgccccggtggagctgcgcgagtcccagcagttgcggctgcgtcggctc
taccccaagtcgatcctcaagaacgccacccacaccctgctggtgccggtccccaaggcc
ggaggcatcggcgggaagcagttgcgcgaccgggaactgctgaggtggtgctcggagctg
gtggaggcgatcttcgagcccggccggaagcgaccgcagggctga
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