Thalassobaculum sp. OXR-137: T8K17_24615
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Entry
T8K17_24615 CDS
T09627
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
thar
Thalassobaculum sp. OXR-137
Pathway
thar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
T8K17_24615 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thar03400
]
T8K17_24615 (ligD)
Enzymes [BR:
thar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
T8K17_24615 (ligD)
DNA repair and recombination proteins [BR:
thar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
T8K17_24615 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WPZ34403
LinkDB
All DBs
Position
5314506..5316971
Genome browser
AA seq
821 aa
AA seq
DB search
MAASRSTPDASADPTERLETYFEKRDFTRTPEPREAGDPAGLALRYSMQKHDATRTHFDL
RLEWKGVLLSWAVTKGPSFQTDQKRLAVRTEDHPVSYLGFEGAIPKGNYGAGTVMLWDIG
HWRPLEPLEKGLKKGHIHLALHGRRLTGGWHLVRMGGKKPGDKGRENWLLIKEEDEAAGE
RDPVRRYRRSVSTNRTFQEIAKDADALPCVERAKTRPRFRKLQLATLGDRLVDGDDWWHE
LKFDGYRALIALGKAGPKIYTRNGHDWTDKFEPLVPALAALDCDSALIDGEIVAGAGMSG
FSDLQKAIKAGGPFTYYAFDLLERDGTDLTAKPLTERRAALEEIFADVPPLGAVQLSPVI
EENAGAVFAAVCDARGEGLIAKRRDARYRAGRGRDWIKVKCTRRDEFVVVGWQESDKQGR
PFASLVLGAYENGDLTYVGKVGTGFDEPTMADLAATMKPLARKTAPVEVPAADARGVRWI
TPKLVAEVTYSELTADGRVRHAVFEGLREDKPAAAVKLGGDTMPDDGRVEIAGISVSHPD
RVVYPKAKITKRQVADYYAAVADRMLETCADRPLSLVRLPTGLDGERFFQKHAGTGFPDA
LTTVEIEEKDGDDALYMYATDAAGLVGAAQMGTLEFHIWGSKRDRLERPDRMVFDLDPDE
GLGFADVKRAATDLRDRLDDLGLPCWPMVTGGKGVHLVVPLRRVAEWETVKLYARIFATL
IAGEEPKRYVAEMSKAKRKGRIFIDWLRNQRGATAVAPFSLRAREGAPAAVPVSWDELGT
LKSAQAFPLEGALERQWSDLSLPEPVGLSRKLVNRLEKAAG
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcacgctccacacccgacgcctccgccgatccgaccgagcggctggagacc
tatttcgagaagcgcgacttcacccgcacgccggagccgcgggaggccggcgatccggcc
gggctggccctgcgctattccatgcagaagcacgacgccacccgcacccatttcgacctg
cgtctggaatggaagggcgtgctgctgagctgggcggtcaccaagggtccgtccttccag
accgatcagaagcggctggcggtgcgcaccgaggatcacccagtctcctatctcggcttc
gaaggcgcgatccccaagggcaattacggcgccggcacggtgatgctgtgggacatcggc
cactggcgcccgctggagccgctggagaagggactgaagaagggccacatccacctcgcc
ctgcacggccggcgcctgaccggcgggtggcatctggtgcgcatgggcggcaagaagccg
ggcgataagggccgcgagaactggctgctgatcaaggaggaggacgaggcggccggcgag
cgggacccggtgcggcgctaccggcgcagtgtctcaaccaaccggacgttccaggagatc
gccaaggacgcggacgccctgccctgtgtcgagcgggccaagacccgcccgcgcttccgc
aagctgcagctcgccaccctgggcgaccggctggtcgacggggacgactggtggcacgag
ctgaaattcgacggctatcgcgccctgatcgccctggggaaggcgggaccgaagatctac
acccgcaacggccatgactggaccgacaagttcgagcccctggtgccggcgctcgccgcc
ctcgactgcgacagcgcgctgatcgacggcgagatcgtcgccggtgccgggatgagcggc
ttctccgacctgcagaaggcgatcaaggccggcggacccttcacctactacgccttcgac
ctgctggagcgcgacggcaccgacctcaccgccaagccgctcaccgaacggcgcgccgcc
ctggaggagatcttcgccgacgtcccgcccctgggtgccgtccagctcagcccggtgatc
gaggagaatgccggcgcggtcttcgcggcggtgtgcgacgcccgcggcgagggcctgatc
gccaagcgccgggacgcccgctaccgcgccggccggggccgcgactggatcaaggtcaaa
tgcacccggcgcgacgagttcgtggtcgtcggctggcaggagagcgacaagcaggggcgg
cccttcgcctcgctcgtgctcggtgcctacgagaacggcgacctgacctatgtgggcaag
gtcggcaccgggttcgacgagccgacgatggcggatctggcggctaccatgaagccgctg
gcgcgcaagaccgccccggtggaggtgccggcggccgatgcgcgaggggtgcggtggatc
acccccaaactcgtggccgaggtcacctattccgaactgaccgccgacggacgggtccgc
cacgccgtgttcgagggcctgcgcgaggacaagcccgccgccgccgtgaaacttggagga
gacaccatgccggacgacggtcgggtcgagatcgccgggatctccgtcagccaccccgac
cgggtggtctaccccaaggccaagatcaccaagcggcaggtcgccgactactacgcggcg
gtcgccgaccggatgctggagacctgcgccgaccggccgctctccctggtccggctgccc
accggcctggacggcgagcggttctttcagaaacacgcgggcaccggcttccccgacgcg
ctgacgaccgtggagatcgaggagaaggacggcgacgacgcgctctacatgtacgcgacc
gacgccgccggactggtcggcgcggcgcagatgggcacgctggaattccacatctgggga
tcgaagcgcgaccggctggaacgcccggaccgcatggtcttcgacctggaccccgacgag
gggctgggtttcgccgacgtgaagcgggccgccaccgacctgcgcgaccggctggacgac
ctcggcctgccctgctggccgatggtcaccggcggcaagggcgtgcatctggtcgtgccg
ctgcgccgggtggcggaatgggagacggtgaagctctatgcccggatcttcgccaccctg
atcgccggggaggagccgaagcgctacgtggccgagatgtcgaaggccaagcgcaagggc
cggatcttcatcgactggctgcgcaaccagcgcggcgccaccgccgtcgccccgttctcc
ctgcgggcacgcgagggggcaccggcggccgtgccggtgtcctgggacgagctcggcacg
ctgaaatccgcccaggccttcccgctggagggggccctggagcggcagtggtcggacctc
tccctaccggagccggtcggcctgtcgcgcaaactcgtgaaccgactggaaaaggcagcg
ggctaa
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