Thalassomonas haliotis: H3N35_11485
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Entry
H3N35_11485 CDS
T08805
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
that
Thalassomonas haliotis
Pathway
that03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
that00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3N35_11485 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
that03400
]
H3N35_11485 (mfd)
Enzymes [BR:
that01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3N35_11485 (mfd)
DNA repair and recombination proteins [BR:
that03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3N35_11485 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDE14000
LinkDB
All DBs
Position
complement(2745612..2749151)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSQTSNIFEPIIAKRRGDLADKKVWSNLAGSSSALAIYHGAKNAQSPVLLITFDTPSALR
LEQELLSLNLDNSLSICLFPDWETLPYDSFSPHQDIISQRLSTLYQLSRLKQGIVIVPVT
TLMQRLAPKQYLDANSLVIKKGDKKDLHLLRQELEASGYRHVDQVMEHGEFSARGAILDL
FPMGSTTPFRLDFFDDEIDEIRLFDPDSQRSNDKIDGINLLPAHEFPIDQAGISLFRSQY
RELFSGTIDKESVYHKVSGGILPAGIEYYLPLFFQQTSTLCDYLSPHTLVMLYGNIDQAL
SQHWHDINYRYEERRYDRSRPLVPPERLFLGSDELYSALKPFDRIKLSAAGEQDQASEAK
AGTINFDVSELPDLSVNHKLKQPFELLDKFIADKHTPDKILFVAESQGRRESVLELLLRD
NIKPQLVESIDEFINSDIKLGITVNALSTGFIFQSSGPGTALKESKGKRGPEPIALITEA
ELLGDRVRQTRRRNKQQDVQADALFKNLAELSIGQAVVHFEHGIGRYLGLQTLETGGITT
EFLMLSYANDAKLYVPVASLHLISRYSGADGDRAPLHKLGTDSWSKAKKKAAEKVRDVAA
ELLDIYAKRASNQGYKFSRDKKDYQAFSDSFGFEETLDQEQAINAVIGDMLQPKAMDRLV
CGDVGFGKTEVAMRAAFVAVNDSKQVAILVPTTLLAQQHYENFRDRFANWPVTIEVLSRF
KSAKEQNEVISRVESGQVDILIGTHKLLQNSISYKDLGLLIVDEEHRFGVKQKEKIKKLR
SNVDILTLTATPIPRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRQRDDALIRESVLREI
LRGGQVYFLHNNVDTIEKTAADLQTLLPEAKIITAHGQMRERELERIMSDFYHQRYNVLV
CTTIVETGIDIPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDA
KKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEDQSGQMSQIGFSLYMEMLDLAVDAL
KEGKEPTLNQVTSSQTEIDLRLPALLPDDYIFDVSIRLSLYKRIASCKHKNQLDEIQVEL
IDRFGLLPQATKNLIQIAKLRLKAQKIGIARLEAGPAGGAIEFSDDTKVDPMFIIGLIQQ
QPAIYKMEGANKLKFKQPTEDAKARFDLVSHMINDLAKH
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaacaagcaatattttcgaacctatcatcgccaaacgccgcggtgaccttgcc
gataaaaaagtatggagcaacttggccggcagcagtagtgcgctggccatttatcatggc
gcgaaaaatgcccaatcgccggtattgctgatcacttttgatacgccgtcggcattacgc
ctggagcaggagctactcagtttaaatcttgataacagcttgtccatttgtttatttccc
gactgggaaaccttgccttatgacagtttttcaccgcaccaggacattatttcccagcgc
ctgtcgaccctgtaccagctgtcacggctaaagcaaggcatagtcatagtaccggtcacc
accttgatgcagcgactggcgcccaaacagtacctggatgccaatagcctggtgattaaa
aaaggcgataagaaagatctgcacctgctcaggcaggaacttgaggccagcggttaccgc
catgtcgaccaggtcatggaacacggcgaattttccgcgcgcggcgccatcctggactta
ttccccatgggcagcaccacgccgttcaggctggatttttttgacgacgaaatcgacgaa
atccgcttatttgatcccgacagccaacgctcaaacgataaaatcgacggcattaattta
ttacccgcccatgaatttcccatcgaccaggcaggcattagtttatttcgcagccagtac
cgggaactctttagcggcaccatagataaagaatccgtttaccataaagtcagcggcggc
atcttacctgccggcatagaatattacctgccgctgtttttccagcaaaccagtacctta
tgcgattatttatccccgcacaccttagttatgttgtacggcaatatcgaccaggcgtta
agccagcactggcatgatatcaactatcgttatgaagaaagacgttatgacagatcccgc
ccgctggtaccgcccgaacggctatttttgggcagtgatgaactttatagcgccttaaaa
ccttttgaccgcatcaagctcagcgctgccggcgagcaggaccaggccagcgaagcaaaa
gccggcaccatcaatttcgatgtcagtgaactgccggatttaagcgtaaaccataaatta
aagcagccgtttgagttactggataagtttattgccgataaacatactccggataaaatc
ctgtttgtcgccgaaagtcagggacgtagggaaagcgtactggaattgcttttgcgggat
aatatcaagccgcagctggtagagagcatagatgaatttatcaacagcgatatcaagctg
ggcattaccgttaatgccctcagcaccggctttattttccaaagcagcggcccaggcaca
gctctaaaggaaagcaaaggcaagcgcggccccgagccgatagccctgatcaccgaagca
gaattgctcggcgaccgggtcagacagacccgccgccgcaacaaacaacaggatgtccag
gcggatgccctgtttaaaaacctggcagaactttctatcggccaggcggtagtgcatttc
gagcacggcatcggccgctatctgggtttgcaaaccctggaaaccggcggtatcaccaca
gaatttttaatgctcagttatgccaatgacgccaaactatatgtacctgtggcctcactg
cacctgatcagccgctatagcggcgccgacggcgaccgtgcgccgctgcataaattaggc
accgacagctggagcaaagccaagaaaaaggccgccgaaaaagtacgtgatgttgccgca
gaattgctggatatttacgccaaacgcgccagcaaccagggctataaatttagccgcgat
aaaaaggactaccaggcctttagcgacagtttcggttttgaagaaaccttagatcaggag
caggcgatcaatgccgtgatcggcgacatgctccagccaaaagctatggaccgcctggtg
tgcggcgatgtcggttttggtaaaaccgaagtggcaatgcgtgcagccttcgtggccgtt
aatgactccaaacaggtcgccatcttagtgccgaccactttgctggcccagcagcattat
gaaaattttcgtgatcgcttcgccaactggccggtgaccatagaagtcttgtcccgtttt
aaatccgccaaagagcaaaacgaggtgatctcccgggtcgaatccggccaggtggatatt
ttgatcggcacccataaactgctgcaaaacagcataagctataaagacttaggtttgctg
attgtcgatgaggaacacaggttcggggtcaagcaaaaagaaaaaatcaaaaaactgcgc
agcaatgtcgatatcctgaccctgaccgccaccccgatcccaagaaccttaaatatggcc
atgggcggcatgcgggatctgtcgattatcgccacgccaccggcaaaacgcctggcagta
aaaacctttgttcgccagcgcgatgacgccctgatacgcgagtctgtgctcagggagatc
ctgcgcggcggccaggtttatttcctgcacaacaatgtcgataccatagaaaaaaccgcc
gccgacctgcaaaccctattgccggaagcaaaaatcattaccgcccacgggcaaatgcgc
gagcgcgaacttgaacgtatcatgagtgacttttatcaccagaggtacaatgtactggtc
tgtaccaccatagttgaaaccggtatcgatatccccagtgccaataccattattatggac
agggcagatcatctcggactggcgcaactgcaccaactcaggggccgagtcggccgctct
caccaccaggcctatgcctatttattaaccccccatgaaaagcgcatgaccaaagacgcg
aaaaagcgtctcgaagccattgcttcactggaagatctcggcgccggtttcaccctggcc
acccatgatctggagatccgcggcgccggggaattattaggggaagatcaaagcggccag
atgagccagataggattcagcctctacatggaaatgctggatctggcggtggatgcctta
aaagaaggcaaagaaccgaccttgaaccaggtcacctcctcgcaaaccgaaatcgattta
cgcttgcccgccctgctgccggatgattatatttttgatgtcagcatccgcttaagcctg
tataaacgtattgccagttgtaagcataaaaaccagctcgatgaaatccaggtggagctg
attgaccgtttcggcctcttgccccaagccaccaaaaacctgatacaaatcgccaaatta
cgtttaaaagcacaaaaaatcggcatcgcccgcctcgaagcgggcccggcagggggcgcg
attgaatttagcgatgatactaaggttgatcccatgtttattatcggcttgatccagcag
caaccggcaatttataaaatggaaggggccaacaaactcaagtttaagcagccgacagaa
gatgccaaggcgcgttttgacctggtcagccatatgataaatgacctggcaaaacactaa
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