Thermosynechococcus sp. CL-1: FFX45_01305
Help
Entry
FFX45_01305 CDS
T06232
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thec
Thermosynechococcus sp. CL-1
Pathway
thec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFX45_01305 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thec03400
]
FFX45_01305 (mfd)
Enzymes [BR:
thec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFX45_01305 (mfd)
DNA repair and recombination proteins [BR:
thec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FFX45_01305 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEQ00144
UniProt:
A0A5C2M408
LinkDB
All DBs
Position
complement(274681..278109)
Genome browser
AA seq
1142 aa
AA seq
DB search
MSLMAIPRSWGKLPLTAELLSKLQHQRELVLTGMPRLVKGFVATTLAQQSQQSLCVITST
LEEGGRWAAQLELMGWEAVLFYPTSEASPYDPFDLEAEMVWGQLQVLVESDRPNIAIVTT
ERALQPHLPPPEQFRAACLTLEVGQEHSLGEVATALAALGYERVSLVETEGQWSRRGDIV
DIFPVSAELPVRLQWFGDEIESIREFDPASQRSLHTEGDRLDALAQVTLTPISFTPLIAQ
ALRAADHAHLISEDQEGLRRYLGVAFPQPASLLDYLPAQTLIAVDEPPLCAAHGDRWYEH
SQAYWQSLETPPPPIHRPWSASVQALERFQRVHLYELASEGLGLNLSARAIPAIPHQFGR
LAATLREERDKGYTVWLVSAQPSRSVALLQEHDCPAQFVPNPKDFPAIDKLQQQRLPIAL
KASGLAEISGFILPTFRTVLVSDREFFGQHNLVNLGYVRKRRRAAAKQVDLNKLQPGDYV
VHRQHGIGQFLRLETLTINNETREYLALQYADGILRVAADQLNSLSRYRKQSDGVPQLNK
LTGNTWERTKARVRKAIKKVAVDLLQLYAQRAQQRGFAFPPDTPWQQEMEDSFPYQPTPD
QLKAIQEVKADMESDRPMDRLVCGDVGFGKTEVAIRAIFKAVMAGKQVAVLAPTTILTQQ
HYHTLKERFAPYPIQVGLLNRFRTESERQEILQKLKTGEMDVVVGTHQLLSKSVKFRDLG
LLVVDEEQRFGVNQKEKIKALKIQVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRR
PIQTHLAPYDPETVRSAIRQELDRGGQVFYVVPRVAGIEEVAAKLQGMVPSARILIAHGQ
MAEGELESTMLAFSNGEANILVCTTIIESGLDIPRVNTILVEDAQRFGLAQLYQLRGRVG
RAGIQAHAWLFYPRQEVLTEAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQH
GQLDSVGFDLYVELLEEAIAEIRGQEIPAVDDTQVDLNVTAFIPADYMPDLEQKMAAYRA
VSAATTKEDLRQLAAEWSDRYGALPKSVQQLLRVVELKQLARQCGISRIRPEGKQHVILE
TPMAEPAWKLLLEQLPTHLQSRFVYSQGKITVRGLGTQPVEKQLEQLIDWFSQMKTTVAT
PP
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtccttaatggccattccccgcagttggggtaagctgccgctgacagctgaactgctc
agcaaattacaacaccaacgggaactggtcctcacggggatgccccgccttgtcaagggc
tttgtggccaccacattggcgcagcagagtcagcaatcgctgtgtgtgattacttccact
ctagaggaggggggacgctgggcggcgcaattggaactgatgggttgggaggcggtgctc
ttttacccgacatcggaggcctctccctatgacccctttgacttggaagcggagatggtc
tgggggcagctgcaagttctagtcgagagcgatcgccccaatattgcaattgtcaccacg
gaacgggcactgcaaccccatttacccccaccagagcagtttcgtgccgcctgtctaact
ttagaggtgggtcaagagcactccctaggggaagtggccaccgccttggcagcccttggt
tatgagcgggtttctctcgtggaaacggaaggccagtggagtcggcgcggcgacattgtg
gatattttccccgtctcggcggagctaccggtgcgcttgcagtggtttggcgatgagatt
gagtccattcgcgagtttgatccggccagtcaacgctccctacacaccgagggcgatcgc
cttgatgcccttgcgcaggtaaccctgacgcccattagttttactcccctgattgcccaa
gccctgcgggcagcggatcacgcccatctcatttcagaggatcaagagggattgcggcgc
tatctgggggtggcttttccgcaaccggcttcgctcttggattatttgcctgcccaaacc
ctcattgccgtggatgagccgcccctctgtgctgcccatggcgatcgctggtatgagcac
agtcaagcctactggcaaagccttgaaacgccacccccccccatccatcgtccgtggtca
gccagtgtccaagccctcgagcggtttcaacgggtgcacctctacgaactggccagtgag
ggactcggtctcaatttatcagcacgggcgattccagccattccccaccaatttggtcgc
ttggcggcaaccctgcgggaggaacgggacaaggggtacaccgtgtggttagtctctgcg
cagccgagtcgctctgtagccctgttgcaggagcatgattgccccgcccagtttgtgccc
aatcccaaggactttccggccattgataagctgcaacagcagcgactgcccattgccttg
aaggccagtggtctagcggaaattagtggctttattttgcctacgttccgcacggtgctg
gtgagcgatcgcgagttctttggtcagcacaacttggtcaaccttggctatgtgcgcaaa
cgccgccgcgctgctgccaaacaggtggatctcaacaagctccagccgggggactacgtc
gtccatcgccaacacggcattggtcagttcctgcgcctagaaacgctaacgattaacaac
gaaacccgcgagtatctcgccctgcaatatgccgatggcattctccgcgttgccgccgat
caactcaacagcctctcccgctaccgtaagcaaagcgatggcgttccccaactgaataag
ttaacgggcaacacttgggaacgtaccaaagcacgggtgcgcaaggccattaagaaagtg
gcggtggatctgctgcaactctatgcccaacgcgcccaacaacggggctttgccttccct
ccagatacaccgtggcagcaggaaatggaggactcgtttccctatcagcccaccccggat
caactcaaggccatccaagaggtcaaggccgatatggagagcgatcgccccatggatcgg
ctggtctgcggtgatgtgggctttgggaaaaccgaagtggccattcgcgctattttcaaa
gccgtgatggcaggcaaacaggtggccgttcttgccccgacgacaatcctaacgcagcag
cattaccacaccctcaaggaacgctttgctccctatccgattcaagtggggctgctcaac
cgtttccgcaccgagagtgagcggcaagagatcctgcaaaagctgaaaacgggcgaaatg
gatgttgtcgttgggacgcaccagctcctgagcaagagcgttaaatttcgggacttaggg
ctactggtggtggatgaggaacaacgctttggcgtcaaccaaaaggagaaaatcaaagcc
ctcaaaatccaagtggatgtgctcaccctcagtgcaacgccaattccccgcaccctctat
atggctctgtcgggggttcgagaaatgagtctaatcaccacaccacccccctcgcggcgc
ccgattcaaacccaccttgctccctatgacccagaaacggtgcgcagtgcgattcgccaa
gaattggatcgggggggtcaagttttctatgttgtgccgcgggttgcgggaattgaggag
gtggcggcaaagctgcaagggatggtgcccagtgcccgtattctcattgctcacggccag
atggcagaaggagaactggaatccacgatgcttgcctttagcaatggtgaagccaatatt
ctggtgtgtacgaccatcattgagtccggcttagatattccccgtgtgaatacgattttg
gtggaggatgcgcagcggtttggcttggcacagctttatcaactgcggggtcgggttggc
cgagcgggcattcaagcccatgcgtggttgttttatccccgtcaagaggtgctgactgag
gcggcacgccaacggctgcgggctattcaggagtttacccaactgggatcgggctaccaa
ctggcaatgcgagacatggaaattcgcggtgtcggcaatctcctaggggcggagcagcac
ggtcaactggacagtgttggctttgatttgtacgtggaactgctcgaggaggcgatcgct
gaaattcgtggccaagagattcccgccgttgacgatacccaagtggatctcaatgtcact
gcctttattcccgctgactatatgcccgatttggagcaaaagatggccgcctaccgcgcg
gtgtccgctgcaacgacaaaagaagacttgaggcaattggcagcagagtggagcgatcgc
tatggggcattgcccaaatcagttcagcaactgctgcgggttgtggaactcaaacaactg
gcgcgccagtgtggcattagccgcattcgtccggaaggcaagcaacatgtgatcttggaa
actccgatggctgaacccgcatggaaactgctcctagagcaactgcccacgcatctccaa
agtcggtttgtctacagtcagggcaaaattaccgtgcggggtctagggacgcaaccggtg
gagaaacaactggagcaactcattgactggttcagccaaatgaaaacaaccgttgcgaca
cccccctaa
DBGET
integrated database retrieval system
