Thermaerobacter sp. FW80: E1B22_09310
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Entry
E1B22_09310 CDS
T05930
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
thef
Thermaerobacter sp. FW80
Pathway
thef03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E1B22_09310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thef03400
]
E1B22_09310
Enzymes [BR:
thef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E1B22_09310
DNA repair and recombination proteins [BR:
thef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E1B22_09310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
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Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QBS37936
UniProt:
A0A4V1BEW4
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Position
complement(2241204..2242388)
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AA seq
394 aa
AA seq
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MAGGGPPIPRTWHELWCPGRLPPMLARRAPAPFSSPAYRFEVKWDGYRCLAFADPVLGRT
FLQSRHGHDLAPRFPELAGLHRLLPAAAVLDGEIVALVAGRPSFAALQRRAGGVRAAAGA
ARDRSAAIAPALFVVFDLLGLGGEVWLRRPLADRVHRLERLFPQGSAPGVALSRGVEGQG
EALFARVRDQGLEGVVAKRLDSPYLPGWRTDHWQKIKAERELEAVVGGVVPGGRAAGVGT
LLLGLYGPDGALHYVGDVSTGLGGEAIRHLLGRLRPRATCPFATVPARARHRPVVWVEPS
LVCEVTYLHWTPQGHLRHPVFRRWRDDRAPRDCRLPADAGHPAAGRDPDGPGDGPLGRGR
GLPGGSPRGRPGASPRERGEDLPGGNPRERGEDG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggcggagggccgcccatcccgcggacgtggcacgagctctggtgcccgggccgg
ctgccgccgatgctggcccgccgggcccccgcgcccttctcctcgccggcctaccgcttc
gaggtcaagtgggacgggtatcgctgcctggccttcgccgaccccgtcctgggacgcacc
ttcctccagtcccgccacggccacgacctggcgccgcgattccccgagctggccggcctc
caccgcctgctgccggcggccgcggtcttggacggggagatcgtcgccctggtggccggg
cggccctccttcgccgccctccaacgtcgggccggaggggtgcgcgcggcggccggcgcg
gcccgcgaccggtccgccgccatcgctccggcgctgttcgtcgtcttcgacctcctcggg
ctcggcggcgaggtctggcttcgccgcccgctggccgaccgcgtccaccgcctggagcgc
ctcttcccccaggggtcggcgcccggcgtcgctctctcccgcggcgtcgagggccagggc
gaggcgttgttcgcccgcgtccgcgaccaggggctggagggcgtggtggccaagcgcctg
gacagcccctatttgccgggatggcgcaccgaccactggcagaagatcaaggcggaacgg
gagctggaggcggtggtgggcggggtggtgcccggaggccgggcggccggggtggggacc
ctgctcctggggctctacggtccggacggggcgctgcactacgtgggcgacgtcagcacg
ggcctcggcggcgaggcgatccgccacttgctgggacgcctccgcccgcgggccacctgc
cccttcgccacggtgccggcgcgcgcccgccaccggccggtggtctgggtcgagcccagc
ctggtgtgcgaggtgacctacctgcactggacgccccaggggcacctgcggcaccccgtc
ttccggcgctggcgcgacgaccgggcgccgcgggactgccggctgcccgccgacgcgggt
cacccggccgcgggccgcgacccggacggtcctggcgacggcccccttgggcgagggcga
ggcctccccggagggagcccccgcgggcgccccggagcgagccctcgcgagcgcggggag
gacctccccggagggaacccccgcgagcgaggggaggacggctga
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