Thermomonas sp. HDW16: G7079_08265
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Entry
G7079_08265 CDS
T06498
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
theh
Thermomonas sp. HDW16
Pathway
theh03030
DNA replication
theh03410
Base excision repair
theh03420
Nucleotide excision repair
theh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
theh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G7079_08265 (ligA)
03410 Base excision repair
G7079_08265 (ligA)
03420 Nucleotide excision repair
G7079_08265 (ligA)
03430 Mismatch repair
G7079_08265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
theh03032
]
G7079_08265 (ligA)
03400 DNA repair and recombination proteins [BR:
theh03400
]
G7079_08265 (ligA)
Enzymes [BR:
theh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G7079_08265 (ligA)
DNA replication proteins [BR:
theh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G7079_08265 (ligA)
DNA repair and recombination proteins [BR:
theh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G7079_08265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G7079_08265 (ligA)
MMR (mismatch excision repair)
DNA ligase
G7079_08265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G7079_08265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
VMAP-M8
Motif
Other DBs
NCBI-ProteinID:
QIL21748
UniProt:
A0A6G7ZYC9
LinkDB
All DBs
Position
complement(1772749..1775097)
Genome browser
AA seq
782 aa
AA seq
DB search
MAAMTDIATRIAELRRRIEDANRRYHQLDAPDITDAQYDALVRELEALEREHPQLATADS
PTRRVGAAPSGRFASVEHAVPMLSLGNAFSDEEVADFVRRIRERLDRDDLVFSAEPKLDG
LAISLRYEDGAFVQGATRGDGATGEDVTANLRTIKVIPAQLTGEGWPRVLEVRGEVYMAR
ADFERWNEHARLHGSKVLANPRNGAAGSLRQIDAQQTAQRPLSFFAYGIGQVEGGALPPT
HSATLAKLREWGFPVSDLATVVHDLDGLLDYYQRIGEARDGLAFDIDGVVYKLDDIAGQR
EMGFVSRAPRWAIAHKFPAQEQATVLESIEVNVGRTGAVTPWALMRPVHVGGVTVTRATL
HNADHVARLDVRAGDTVIVRRAGDVIPEVVQVVLEQRPPGTHPWTMPMRCPVCDSEVVRE
EGAAVWRCSGELSCPAQLVQSVFHFASRRAMDIDGLGERYIESLAEFGGLRDVSDLYRLG
VDDLLEMKRRADERDGSTPETVKAGKVATKWADNLITAIDASRDTTLARFLYALGIEHVG
ESTAKALAQWFGNLALIRHLPWPLFKRVPDIGGEVARAIGHFLDQPGNQQVIDRLLERGV
RIGDTHAPNPKLGDALDLAALLADLEIPKVTPVRAAQLGMAFADAQAMLDAPAHNLVTAG
LPADSANALVAWLDDEANAALLLRSAQAQAALGARLPERSEQTAGPMDGKTVVLTGGLSA
MSRDEAGAKLEALGAKVAGSVSKKTSLVVAGEAAGSKLAKAQELGIEIWDEAALLAFLAE
HA
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atcgcagccatgaccgacattgccacccgcatcgccgaactccggcgccggatcgaagac
gccaaccggcgttaccaccagctggatgcgccggacatcaccgacgcgcagtacgacgca
ttggtgcgcgagctggaagcgctggaacgcgagcatccgcaactggccacggcggattcg
cccacgcgccgggtcggtgctgcgccatccgggcgtttcgcctcggtcgagcatgcggta
ccgatgctgtcgctgggcaacgccttcagcgacgaggaggtggccgatttcgtccgccgt
atccgtgaacggctggatcgcgatgacctggtgttctccgccgaacccaagctggatggc
ctggcgatcagcctgcgctacgaggacggtgcgttcgtgcagggcgcgacgcgcggcgat
ggcgccaccggcgaggacgtgaccgccaacctgcgcacgatcaaggtgattcccgcgcag
ctcacgggcgagggttggccacgggtgctggaggtgcgcggcgaggtctacatggcgcgc
gccgacttcgaacgctggaacgaacacgcccgtttgcacggcagcaaggtgctggcgaat
ccgcgcaacggcgcagccggctcgttgcggcagatcgatgcgcagcagactgcgcaacgc
ccgctgagcttcttcgcctatggcatcggccaggtggagggcggcgcgctgccgcccacg
cattcggccacgcttgcgaagttgcgcgagtggggcttcccggtcagcgacctcgccacc
gtggtgcatgacctggatggcttgctggattattaccagcgcatcggcgaggcacgcgac
ggattggccttcgacatcgacggcgtggtctacaagctggacgacatcgccggccagcgc
gagatgggcttcgtttcacgtgcgccacgctgggccatcgcccacaagttcccggcgcag
gaacaggcgacggtgctggaatccatcgaggtcaatgtcggtcgcaccggtgcggtcacg
ccgtgggcattgatgcggccggtgcatgtcggaggcgtcaccgtcactcgcgccaccctg
cacaacgcggatcacgtggcccggttggatgtgcgcgctggcgacacggtgatcgtgcgc
cgcgccggcgacgtgatcccggaagtggtgcaggtcgtgctggaacagcgtccaccgggc
acgcacccatggacgatgcccatgcgctgcccggtctgcgattcggaagtggtgcgcgag
gaaggcgcggcggtctggcgctgctcgggtgaactgagttgcccggcgcagttggtgcag
tccgtgttccatttcgcatcgcggcgcgcgatggacatcgatggattgggcgagcgttac
atcgaatcgctggccgagttcggcgggctgcgcgatgtgtcggatctgtatcgcctcggc
gtcgacgatctgctcgaaatgaagcggagagcggatgagcgcgacggctccaccccggag
accgtcaaggccggcaaggtggcgaccaagtgggcggacaacctgatcaccgccatcgac
gccagccgcgacaccacgctggcgcgcttcctgtacgcgctcggcatcgagcatgtcggc
gagagcacggccaaggcgctggcgcagtggttcggcaacctcgcgctgatccgccatcta
ccgtggccgctgttcaagcgcgtgccggacatcggtggcgaagtggcgcgtgcgatcggg
catttcctcgaccaaccgggcaaccagcaggtcatcgaccgcctgctggaacgcggcgtg
cgcatcggcgatacgcatgcgccgaatccgaagctgggcgatgcgctggatctggcggcg
ctgctggccgatctggaaatccccaaggtgactccggtgcgtgcggcgcaactcggcatg
gccttcgccgacgcgcaggccatgctcgacgcgcccgcgcacaacctggtgaccgccggc
ctgccggccgacagtgccaatgccttggtggcctggctggacgacgaagccaatgccgcc
ctgctgctgcgcagcgcacaggcgcaggcggcgttgggcgcacgcttgccggaacgcagc
gaacagaccgcggggccgatggacggcaagaccgtggtgctgaccggcgggctgtcggcg
atgagccgcgacgaagccggcgcgaagctcgaagcccttggtgccaaggtcgccggcagc
gtgtcgaagaagacctcgcttgtggtcgccggcgaagccgccggcagcaaactggcgaaa
gcgcaggaactcggcatcgagatctgggacgaggcggcgctgctcgcgttcctggccgaa
cacgcatga
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integrated database retrieval system
