Thermosipho sp. 1070: Y592_00830
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Entry
Y592_00830 CDS
T04909
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ther
Thermosipho sp. 1070
Pathway
ther03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ther00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y592_00830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ther03400
]
Y592_00830
Enzymes [BR:
ther01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y592_00830
DNA repair and recombination proteins [BR:
ther03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Y592_00830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
SecA_DEAD
AAA_22
AAA_30
SSV1_D-63
Motif
Other DBs
NCBI-ProteinID:
ANQ53080
LinkDB
All DBs
Position
164467..167166
Genome browser
AA seq
899 aa
AA seq
DB search
MNEIIIVPTEKECNISGYFHIPSYDIFPFEEIENSWYVRSKRIYALYLALEGKLKAISTL
YSLTRYVMPPDIFKKYIFKLKPGDRLNSPEMLFSNLGYKRTYNVTEGGQFSIRGDIIDFF
GPNNIPIRIELFENTIEEIRIFDVATQKSIKNIEYALILPAKEYIEKITHETILGEKYNG
TFIDYNIEFKIVDKKRCIEEYVKKEREIRELIISQDLRKKYIKFSGIDYTKIITLSKESD
IELKPVKFEKEINSIPVISEEEFEMGELVVHKEYGIARFEGTTKILQKGLEREFLILQFK
DSKLFVPTDRLDLIQKYIGAKDTIQLDSLKKNNWQKKVKKVRKEIQNTVKELLRLNALRK
KTKGLSLPGDPELEKEFAKTFPHIETEDQLKAIEEVNNDLMLDKNMDRLIAGDAGYGKTE
VAMRAAFKTVVSGKQVAILVPTTVLARQHFETFKKRVEKFGIKVELFDSSLTQKQKEKVK
ENIKKGITDIVIGTHGIISSIKFSDLGLLIIDEEQKFGVHQKEAFKKVRINLNILSMSAT
PIPRTLHMALSGLKDMSILKTPPIGRKNIQVFVSKFDEKITRHAILREINRGGQVIYVHN
RVNSIEEVANNLKKIVPEVKIDIIHGQLPKRKMEKVIKEFYNGKLDVLVSTSIIENGVDI
PNANTLIVDDAHRYGLSQLYQLRGRVGRSKKRAFAYFFYPEKINKVATERLKAIKEIMGP
GSGFQIALKDMEIRGIGNILGLEQHGFINEIGLNYYFEILDEVLSNMEGKIQSKVTTELL
GMKGSIVIPDNYVNDPVERLRLYRRISSFSNGNEINEIYDEFKDRFGTPPQSVLNLLKYA
KIRILASKKGISKIIFKDEAIIAYTNDNLKIDLPHIYNEREKSYIIYSDEETFLKFLQK
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaataattatcgttccgacagaaaaagaatgtaatataagcgggtattttcac
attccatcttatgatatctttccatttgaagaaatagaaaattcttggtacgtacgctcc
aaaagaatatacgcgctctatcttgcacttgaagggaaattaaaagctatttccacactc
tactccctaacaagatacgttatgccacctgatatcttcaaaaaatatatttttaaatta
aaaccaggtgatagactcaattcacctgaaatgttattttcaaatctaggatataaaaga
acgtacaacgtaacagaaggagggcaattttcaataagaggagatataatagattttttt
ggacctaataacattcccattcgtattgaattatttgaaaatacaatagaagaaataaga
atatttgacgttgcgacccaaaaaagtattaaaaatatcgaatatgctctaattctaccg
gccaaagaatatattgaaaaaataacacatgaaactatcttaggcgaaaaatacaacggt
acatttatagactacaatatagaatttaaaatagtagataaaaaaagatgtattgaagaa
tacgtaaaaaaggaaagagaaataagggaacttataataagtcaagacttaagaaaaaag
tatataaaattttcgggaatagattacacaaaaattataactctatcgaaagaaagcgac
atagaattaaaacctgtaaaatttgaaaaagaaattaattccataccagttataagcgaa
gaagagttcgaaatgggagaactagtcgtacataaagaatacggtatagcaagatttgaa
ggtactacaaaaatattacaaaaaggtcttgaaagagaatttctaatacttcaatttaaa
gattcaaaactatttgtaccaactgatagattagatttaatccaaaaatatattggggca
aaagataccatacaattagatagtctgaaaaaaaataactggcaaaaaaaggttaaaaaa
gttagaaaagaaattcaaaatacagtaaaagaactcctgagattaaatgcactaagaaaa
aaaacaaaagggttatcacttccaggagatcctgaacttgaaaaagagtttgcaaaaact
tttccacacattgaaacagaagatcaactaaaggctatagaagaagtaaataatgactta
atgttagataaaaacatggatagacttattgctggagacgccggttatggaaaaacagaa
gttgccatgcgcgctgcttttaaaactgttgtttctggaaaacaagtagcaatcttagtt
ccaacgactgtacttgcaagacaacactttgaaacatttaaaaaaagggttgaaaaattt
ggaataaaggtagaactattcgacagctctcttacccaaaaacaaaaggaaaaagttaaa
gaaaatataaaaaaggggatcacagatattgtaataggaacacatggaattatctcttcg
ataaaattctccgatttgggacttttaataatagatgaagaacaaaaatttggtgtccat
caaaaagaggcatttaaaaaagtaagaataaatttgaacatcctttcaatgagtgctaca
ccaattccgcgtaccctacatatggctttaagtggtcttaaagacatgtccattttaaaa
actccacctattggaagaaaaaatatacaagtttttgtgagtaaatttgatgaaaaaatt
actagacatgctatcttaagagaaataaacagaggaggtcaagtaatctacgtacacaac
agggtaaactccattgaagaagtagcaaataatcttaaaaagatagttccagaagtaaaa
atagatattatccacggccaattaccaaaaagaaaaatggaaaaagttataaaggaattt
tacaatggaaaattagatgtacttgtttcaacatctattattgaaaatggagttgatata
ccaaatgcaaacacattaatagttgacgatgctcacagatatggcctttcacaactttat
caactaagaggcagagtgggaagatcaaaaaaaagggcatttgcatactttttttatcca
gaaaaaataaataaggttgcaacagaaaggcttaaggcaattaaagaaattatgggaccg
ggaagtggttttcaaatagctttaaaagatatggaaataaggggaattggaaatattttg
ggacttgaacaacacggctttataaatgaaataggcttaaattattattttgaaatatta
gatgaagtattgtcaaatatggaaggaaaaatacaatcaaaagtaactacagaattgtta
ggaatgaaaggttcaattgttattccagataattatgtaaatgatcccgttgaaaggctc
agactctatagaagaatttcttctttttctaatggaaatgaaataaatgaaatatacgat
gaatttaaagatagatttggaacacctcctcaaagtgttttaaatcttctaaaatatgcc
aaaataagaattttagcttcaaaaaaagggatttcaaagattatctttaaagatgaagca
ataattgcatacacaaacgacaacttaaaaattgaccttcctcatatatataacgaaaga
gaaaaatcatatataatatactcagatgaagaaacgtttctaaaatttttgcagaaataa
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