Thermoleptolyngbya sichuanensis: HPC62_18655
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Entry
HPC62_18655 CDS
T06607
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
theu
Thermoleptolyngbya sichuanensis
Pathway
theu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
theu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPC62_18655 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
theu03400
]
HPC62_18655 (mfd)
Enzymes [BR:
theu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPC62_18655 (mfd)
DNA repair and recombination proteins [BR:
theu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPC62_18655 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QKD83946
UniProt:
A0A6M8BHT2
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All DBs
Position
4499408..4502953
Genome browser
AA seq
1181 aa
AA seq
DB search
MVFSSICRVMGRSPLTAELLTKLNQQRRLILNGIARLPKGLVASTLAQVAQRPLLVIAAT
LEEAGRWTAQLEAMGWNTVHFYPTSEASPYEPFDPESEMTWGQLQVLADLARVESSPHLS
QLAIVSTERSLQPHLPPVETFRQFCITLTQGLEIDLKSLSRQLALLGYEKVAMVETEGQW
SQRGDIIDVFPVAAELPVRLELFGDELEKIREFDPASQRSLDNVPQLVLTATDFAPMVLL
GLGASGQGDLAESLELLKPYLSPEEAERLAESRRLEGARRFLGLAFERPASLLDYLPENT
LVAIDEVEQCQAHGDRWFDHAEDHWREICGGQGTVGDGLAAQSPPAPTLPKTHRPFTESL
AACDRFLCLHLSELAEEGSGLNLASRPVPAVPHQFGRLAETIRQERDRQFGIWLISAQPS
RSVALLQEHDCPAQFIPNPHDYPAIDRLQANRVPTAVKYSGLAELEGFILPTFRIVVITD
REFFGQHTLATPSYVRKRRRAASKQVDPNKLQPGDYVVHKNHGIGQFIKLESLTLDNETR
EYLVLKYADGLLRVAADQVNALSRFRGVGEGKPELSKMTGKAWERTKQKVRKAIKKVAFD
LLQLYAQRAQQQGHAYPPDTPWQEEMEDSFPYQPTTDQLKAIQDVKRDMEGDRPMDRLVC
GDVGFGKTEVAIRAVFKAITAGKQVALLAPTTILTQQHYHTLKERFAPYPIQVGLLNRFR
TNAEKQDILKRLASGELDVVVGTHQLLGKGVQFKDLGLLVVDEEQRFGVNQKEKIKTLKT
QVDVLTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLSPYDPEMVRTAIRQELD
RGGQVFYVVPRVEGIEETAAKLREMVPGVRMAIAHGQMQEGELEATMLTFNNGEADILVC
TTIIESGLDIPRVNTILIEDAQKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQSQLTETAR
QRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIKEIR
GQEIPQVDDTQIDLRLTAFIPTDYIPDLDQKMSAYRAVAAAQTKQELTEIAVDWSDRYGP
IPPAALQLFRVVELKQIAKKLGFSRIKPDGNQHVVLETPMEEPAWNLLKDKLPSHLQPRF
VYTSGKVTVRGLGALSADLQLENLIDWLSRMQGALLEPSLV
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggtgttttcgtcaatttgtcgcgtcatggggcgatcgcccctcacggccgaactgctc
accaagctgaaccagcagcgccgcctcattctcaacggcatcgcccgcctgcccaaggga
ctggtcgcctctaccctggcccaagtggcccagcgcccgctgctggtgattgccgccacg
ctggaggaagccggccgctggacggcccaactagaggcgatgggctggaacacggtgcat
ttctaccccacgtcggaagcgtcgccctacgaaccctttgaccccgaatcggagatgacc
tgggggcagttgcaggtgttggcagatttggcgcgggtcgagtcgtcgccccatctgtct
cagcttgcgattgtgtccaccgagcgatcgctccagccgcacctgccgcctgtggagacg
tttcgccagttttgcatcacgctgacccagggcttggaaattgacctgaaatccctcagt
cgccaactggcgctgctgggctacgaaaaagtagcgatggtggaaacggaggggcagtgg
agccagcggggagacattatcgacgtgtttccggtggcggcggagttgcccgtgcgcctg
gagctatttggcgatgagctagagaagatccgcgagtttgaccccgccagccagcgatcg
ctcgacaatgtgccccagttggtgctgacggcaacggattttgcgccgatggtgttgtta
gggttgggggccagcggtcagggcgatttggcagaaagtttggagcttctcaagccgtac
ctatccccggaagaagcagagcggctggcggaaagcaggcggctggaaggggcgcggcgg
tttctggggctggcgtttgagcggcccgcgtcgctgctggattatttaccagagaatacc
ctggtcgccattgatgaggtggagcagtgtcaggcgcatggcgatcgctggtttgaccat
gcagaagaccactggcgcgagatatgcggggggcaggggaccgtgggcgacggcttggcc
gcgcaatctcccccggctccaaccctccccaagacccaccgaccgtttacggagtccctt
gcggcgtgcgatcgctttctgtgtctacacctttccgaactggcggaggagggcagcggg
ctgaacctggcgagccgcccggttcccgccgtgccgcaccagtttgggcgcttggcagag
acgattcgccaggagcgcgatcgccagtttgggatctggctgatttcggcgcagccgtcg
cggtcggtggcgctgttgcaagaacacgactgtccggcgcagttcatccccaacccccac
gactatccggccatcgatcggctccaggcgaaccgcgtgccgacagcggtgaagtattcc
ggtctggcagagctagagggcttcattctgccaacgttccgcatcgtcgtcatcaccgac
cgcgagttctttgggcagcacaccctggccacgcccagctacgtccgcaagcgtcgccgc
gccgcctccaaacaagttgacccgaacaaactgcaaccgggtgattacgtcgtccacaaa
aaccacggcattggccagttcatcaagctggaaagcctgacgctggacaacgaaacccgc
gaatatctggtgctgaaatatgccgacgggctgctgcgggtggcggcggatcaggtgaat
gcgctgtcgcggtttcgcggcgtgggcgagggcaaacccgaactcagcaagatgacgggc
aaagcctgggaacgcaccaagcaaaaggttcgcaaggcgattaagaaagttgcctttgac
ctgttgcaactctacgcccagcgggcccagcagcagggccacgcctacccgccggatacg
ccctggcaggaggaaatggaagactcgttcccctaccagcccacgaccgaccagctcaag
gcgattcaggacgtgaagcgggatatggagggcgatcgcccgatggatcggctggtctgc
ggcgacgtgggcttcggcaaaacggaagtcgccatccgcgctgtgttcaaggcgatcacc
gctgggaaacaggtcgccctgctcgcgccgacgacgatcctgacgcagcagcattaccac
accctgaaggagcgctttgccccatacccgattcaggtcggtctgctgaaccgttttcgc
accaatgccgaaaagcaggacatcctgaagcgcctcgcctctggggaactggatgtggtg
gtggggacgcaccagcttttgggtaagggcgtgcagttcaaagacttggggctactggtg
gtagacgaagagcagcgctttggcgtgaaccaaaaggaaaaaatcaaaaccctgaaaacc
caggtagacgtgctgaccctcagcgctacgccgattccccggacgctttacatggcgctg
tcgggcgtgcgcgaaatgagcttgattaccacgccgccgccctcccgccgccccatcaag
acccacctgtcgccctacgatccggagatggtgcggacggcaattcggcaggaactcgat
cgcggtgggcaggtgttttacgtggtgccacgggtggagggcattgaggaaaccgccgcc
aagctccgagagatggtgccgggggtgcggatggcgatcgcccacgggcagatgcaggaa
ggcgaactggaagccaccatgctcaccttcaacaacggcgaggcagatatccttgtctgc
accaccattatcgaatcggggctggacatcccccgtgtgaatacaattctgatcgaagac
gcgcagaagttcggtctgtcccagctttaccaactccggggacgggtcggccgcgcgggc
atccaggcccatgcgtggctattttacccaaaacaaagccagctcacggaaaccgcccgt
cagcggctgcgcgccattcaggaatttacccagcttggctctggctatcagttggccatg
cgcgatatggagattcgcggcgtgggtaatttgctaggcgcggagcagtcggggcagatg
gacgcaatcggctttgacctgtacatggaaatgctggaggaagccatcaaggaaattcgc
gggcaggaaattccccaggtggacgacacccagatcgacctacgcctcactgccttcatc
cccaccgactatatccccgacctggatcaaaagatgagcgcctatcgcgccgtcgccgct
gcccagaccaagcaggaattgaccgagattgcggtggattggagcgatcgctatggcccc
attccccccgccgcgctgcaactgttccgcgtggtggaactaaagcagattgccaagaaa
ctaggcttctcgcgcatcaagcccgacggcaatcagcatgtcgtgctagaaacgccaatg
gaagaacccgcctggaacctgctgaaggacaagctgcccagccacctgcaaccccgcttt
gtctacacctccggcaaagtcaccgtccgtggcctaggggccctcagcgccgacctccag
ctagagaacctgatcgactggctgagccggatgcagggggccttgttggagccgagcttg
gtttag
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