Thiomonas arsenitoxydans: THI_2109
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Entry
THI_2109 CDS
T02347
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (TRCF) (ATP-dependent helicase mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thi
Thiomonas arsenitoxydans
Pathway
thi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THI_2109 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thi03400
]
THI_2109 (mfd)
Enzymes [BR:
thi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THI_2109 (mfd)
DNA repair and recombination proteins [BR:
thi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
THI_2109 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
SNF2-rel_dom
DUF4217
Motif
Other DBs
NCBI-ProteinID:
CAZ88763
UniProt:
D6CTZ4
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All DBs
Position
2059495..2062977
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AA seq
1160 aa
AA seq
DB search
MSIVHALRAQVPALKPGQRVSWPLPAGSADALLLAEFCAPRDDAAPWLVVTAGAADAQRL
LGELQWFAPQLRVGLLPDWETLPYDSFSPHQDLISERLATLWAIHNQQIDVVIAPANTAI
QRLAPPEFLAAYTFDFRQGEALNEAALRAQLVLAGYNHVSQVMAPGEYAVRGGLIDLHPM
GSPVPYRVDLFGDTIDAIQAFDPDTQRSLYPVKEVRLLPGREFPLDDAAQKRFRARWREV
FEGDPSRSPLYKDMGSGVAGPGIEYYLPLFFEHTATLPDYLGERTRVVLHGDISTAIQKF
WTDTQERHRLLRHDPERPALAPDQLFLSEEAFFSRIKPLAQLALRPKADAPQTDKPTSAE
LPDISADRRATRPLARLAQWLEEGRPQHRRALLLAESAGRRETLRELLQESGLSAQPAES
WDEFVQGTTGFALAVGPLARGFSLPADRLAVLTETELFALNPAQRRRRKQEQASNVDALI
HDLAELQPGDPVVHANHGIGRYQGLAELDLGDGPAEFLHLVYANDAVLYVPVSQLHLIGR
YSGAAQDDAPLHILGSGQWDKARRKAAEQVRDAAAELLNIYARRAAHQGHAFRYSPQDYE
AFAASFGFEETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQ
VAVLAPTTLLAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTH
KLLSPTVKFDRLGLVIVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLR
DLSVIATAPQKRLAIKTFVRSESGAVMREAILREIKRGGQVYFLHNEVETIENRRRQLEE
LVPEARIEIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMARADKF
GLAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLAMHDLE
IRGAGEVLGEQQSGNMQEIGFQLYNDMLGEAVKALRAGREPDLLNPLGVTTEINLHVPAL
LPNDYCGDVHARLSLYKRLASAATSAQLDSVAEEIVDRFGRLPPPAQALVDTHRLRLIAQ
SYGITKIDAAEEVAILHFRKDAPVDAARIIDLIQKNRHIKLTGNDRLRIERPTKDATQRA
QLIRDTLKQLGAPRTEVAIA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctattgtccatgccctgcgcgcgcaagtgcccgcgctcaagcccggccagcgtgtg
agctggccgcttcccgccggaagtgccgatgccctgttgctggccgagttttgcgcgccg
cgcgatgacgccgcgccctggctcgtcgtcaccgcaggcgcagccgatgcccagcgtctg
ctcggcgagttgcagtggttcgccccgcagttgcgcgtcggcttgctgcccgactgggaa
accctgccttacgacagcttttcaccgcaccaggatctgatctccgagcggctggccacc
ctctgggccatccacaaccagcagatcgacgtggtcatcgccccggccaataccgccatc
cagcggctggccccgcccgagttcctcgcggcctacaccttcgatttccgccagggcgag
gcgctcaacgaagccgcgctgcgcgcccagctcgttctggccgggtacaaccacgtcagc
caggtgatggccccgggcgaatacgcggtgcgcggcggtctcatcgacctgcatcccatg
ggctcgcctgtgccctaccgcgtggacctgttcggcgacaccatcgacgccatccaggcc
ttcgaccccgacacccagcgcagcctttacccggtcaaggaggtgcgactgctgccgggc
cgcgaatttccgctcgacgatgcggcgcagaagcgctttcgcgcccgctggcgcgaggtg
ttcgagggcgacccgagccgcagcccactctacaaggacatgggaagcggcgtagccggg
cccggcatcgagtactacctgccgctgttcttcgagcacaccgccactctgcccgactat
ctgggcgaacgtacccgcgtggtgctgcatggggacatttccaccgccatccagaagttc
tggaccgatacgcaggagcgccaccgtctgttgcggcacgacccggagcgccccgccctc
gctcccgaccagctttttctcagtgaagaagcgttcttcagccgcatcaaacccctcgcc
cagcttgcgctgcggcccaaggccgatgcgccgcagaccgacaaacccaccagtgccgag
ctacccgacatcagcgccgaccgccgcgccacccgcccactggcgcgcctggcgcaatgg
ctggaagagggccgcccgcaacaccgacgcgcgctgctgctggccgaatccgccggccgc
cgcgaaaccctgcgcgagctgttgcaggagtccggcttgtcggcccagcctgcggaaagc
tgggacgaattcgtacagggcaccaccggcttcgccctggccgtcgggccgctggcgcgg
ggtttctcgctgcccgccgaccgattggccgtgctcaccgagaccgagctgttcgccctc
aacccggcccagcgcaggcggcgcaagcaagagcaggccagcaatgtcgatgccctgatc
cacgacctggccgagctgcagcccggcgacccggtggtgcatgccaaccacggcatcggc
cgctatcagggcctggccgagctcgatctgggcgacggccccgcggagtttctgcatctg
gtctatgcgaacgatgcggtgctctacgtgcctgtgtcgcaactgcatctcatcggccgc
tacagcggcgcggcgcaggatgacgcgccgctgcacatcctcggctcgggccagtgggac
aaggcccggcgcaaagccgccgaacaggtacgcgacgccgccgccgagctgctcaacatc
tacgcccgccgcgccgcgcatcagggccatgccttccgctactcgccgcaggactatgaa
gccttcgccgcgagtttcggtttcgaggagacgcccgatcaggccgcggccatccatgcg
gtggtgcaggacatgatctcccccaagccgatggatcgcctggtctgcggcgacgtcggc
ttcggcaagaccgaagtcgcgctgcgcgccgcgttcgtggcggtgatgggcggcaagcag
gtggccgtgctcgcccccaccaccctgctcgccgagcagcactgcgagacctttcgcaac
cgcttcgccgactggccggtgcgcattgccgagatgtcgcgctttcgcagcaccaaggag
atcagcgccgcactcgacggcctggcgcgcggcacggtggacatcgtcatcggtacccat
aagctgctgtcgcccacggtcaagttcgaccggctcggcctggtcatcgtcgatgaggag
caccgcttcggcgtgcgccacaaagaggcgctcaaggccatgcgcgcctcggtcgatttg
ctcaccctcaccgccacacccattccgcgcaccctgggcatggcgctcgaagggctgcgc
gatctgagcgtgatcgccaccgcgccgcaaaagcggctggcgatcaagaccttcgtgcgc
agcgaaagcggcgcggtgatgcgcgaggccatcctgcgcgaaattaagcgcggcggccag
gtgtatttcctgcacaacgaggtcgagaccatcgaaaaccgccgtcgccagctcgaagaa
ctggtgcccgaagcgcgcatcgaaatcgcccacggccagatgcacgagcgcgatctggaa
cgggtgatgcgcgacttccacgcccagcgcttcaatattctgctgtgcaccaccattatc
gaaaccggcatcgacgtacccagcgccaacaccatcgtcatggcgcgggccgacaagttc
ggcctggcgcagctgcaccagttgcgcggccgcgtcgggcgctcgcatcaccaggcctac
gcctatctgctggtgcccgatgtgcagagtttgaccaagcaggccagccagcggctcgaa
gccattcaacagatggaagaactgggctcgggcttctatctggccatgcacgacctggag
attcgcggcgccggcgaagtgctgggcgagcagcaatcgggcaatatgcaggagatcggc
ttccagctctacaacgacatgctgggcgaggccgtgaaggcgctgcgcgcaggccgcgag
cccgacctgctcaacccgctgggcgtgaccaccgagatcaatctgcatgtgcccgccctg
ctgcccaacgactattgcggcgatgtgcatgcccggctttcgctctacaagcgactggcc
agcgccgccaccagcgcccagctcgacagcgtggccgaggaaatcgtcgatcgcttcggc
cgcctgccgccgcctgcgcaggcgctggtggacacacaccgtctgcggctgattgcgcag
agctacggcatcaccaagatcgacgcggccgaagaagtggccattctgcacttccgcaag
gacgccccggtggacgccgcccgcatcatcgacctcatccagaagaaccgccacatcaag
ctcaccggcaacgaccgactgcggatcgaacgcccgacgaaagacgccacgcagcgcgcc
cagctcatccgcgacaccctcaagcaactcggcgcgccgcggaccgaggtggcgattgcc
tga
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