Thiocapsa sp. M50B4: KFB96_16610
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Entry
KFB96_16610 CDS
T07253
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
thim
Thiocapsa sp. M50B4
Pathway
thim03420
Nucleotide excision repair
thim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFB96_16610 (uvrD)
03430 Mismatch repair
KFB96_16610 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thim03400
]
KFB96_16610 (uvrD)
Enzymes [BR:
thim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KFB96_16610 (uvrD)
DNA repair and recombination proteins [BR:
thim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KFB96_16610 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
KFB96_16610 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QVL47324
LinkDB
All DBs
Position
3644732..3646918
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AA seq
728 aa
AA seq
DB search
MDVSALLDPLNDAQRAAVAAESGNLLVLAGAGSGKTRVLVHRIAWLIQVQQVPSYAVLAV
TFTNKAAREMRGRIETMLGVPIGGMWVGTFHGLAHRFLRAHWQDAQLPQHFQILDSDDQF
RLIKRILKAMQLDEARWPPRQVQGYINKQKDEGLRPNHLDGGGDFFTDKMITVYRQYEEE
RARSGLLDFADLLLKTLELLRERPDILGHYQRRFAHILVDEFQDTNAIQYAWLRLLAGAN
DNLFAVGDDDQSIYGWRGAKVENIQSFQRDYPNTQVIRLEQNYRSSGNILAAANALIAHN
PTRLGKNLWTQDGEGEPIRRYTAFNEVDEARFVVERIRRFTQSEGHRRDECAILYRTTAQ
SRLFEEALIQAQIPYRVYGGLRFFERAEIRDALGYLRLVANPDDDAAFERVVNTPNRGIG
ARTLDLLRQQARETRVSLWRAAGDLTGTSVLGPRGGAALLGFIDLVRDQRRAREGLPLHA
LVTALIEAAGLPDFYKKNKDGKGQDRVENLEQLVDTAARFEEDLHEEETDALAVFLAHAA
LEAGDTQADGFEDSVQLMTLHSAKGLEFPVVFLVGLEEGLFPHSLSAEDPSRLEEERRLC
YVGMTRAMRELYVTHAESRRLYGREESPLPSRFLREVPPGLVEEVRARSTARRTTSSPGP
IRSPSLASMSSGDAGLFRLGQRVVHPKFGEGVVLNSEGRGAAARIQVNFQKAGAKWLVLA
YARLEPAG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcagcccttctcgatcccctcaacgacgctcagcgcgcggcggtcgccgca
gagtccggtaacctgctcgtactcgccggtgccggatccggcaagacccgcgtcctggtc
catcgcatcgcctggttgatccaggtgcagcaggtgccgtcctacgccgtgctggcggtc
accttcaccaacaaagcggcgcgcgagatgcgcggtcgaatcgagaccatgctcggcgta
ccgatcggcgggatgtgggtcggcacctttcacgggctggcccatcgctttctgcgcgcg
cactggcaagacgcgcagctcccgcagcatttccagatcctggattcggacgaccaattc
cgtctgatcaagcggatcctcaaggcgatgcagctcgacgaggcccgttggccgccgcgt
caggtgcagggctacatcaacaaacagaaggacgagggtctgcggccgaatcacctggac
ggcggcggtgatttcttcacggacaagatgatcacggtctatcgtcagtacgaagaggag
cgcgcacgctcgggcctgctcgacttcgccgatctgctgctcaagacgttggagctgctg
cgcgagcgtccggatatcctggggcactatcagcgacgctttgcccatatcctggtcgac
gagtttcaggacaccaacgccatccagtacgcctggctgcgtttgctcgccggggcgaac
gacaacctcttcgccgtcggcgacgacgatcagtccatctacggctggcgcggcgcaaag
gttgaaaatatccaatcctttcagcgcgattatcccaacacgcaggtcatccggctggag
cagaattaccgttcgagcggcaatattctggccgcggccaacgccctgatcgcccacaac
ccgacccgtctcggcaagaacctctggacccaagacggcgagggtgagccgatccgacgc
tatacggccttcaacgaggtcgacgaggcgcgtttcgtcgtggagcggatccgccgcttc
acccagagcgagggtcatcggcgcgacgagtgcgccatcctctatcgcacgaccgcccaa
tcacgcctgttcgaggaggcgctgatccaggcgcagatcccctatcgggtctacggtgga
ctgcggttcttcgagcgcgccgagatccgcgatgcactcggctatctgcgcctggtcgcc
aatccggacgacgatgccgccttcgagcgcgtggtcaacacacccaaccggggcatcggc
gcccgtaccctggatttgttgcgccagcaggcgcgcgagacacgggtctcgctctggcgg
gcggcgggcgatctgaccgggacctcggtcctgggtccgaggggcggtgccgcactgctc
ggctttatcgatctggtcagggatcaacggcgcgcgcgggagggtctgccgttgcacgcg
ctggtgactgccttgatcgaagcggccggcttgcctgatttctacaaaaagaacaaggac
ggcaagggccaggatcgggtggagaacctggagcagttggtcgacacggccgcgcgcttc
gaggaggacctgcacgaggaagagaccgacgcgcttgcggtctttctcgcgcatgccgct
ctcgaggcaggcgatacccaagccgacggcttcgaggacagcgtccagctcatgaccctg
cacagcgccaagggcctggagtttccggtcgtctttctggtcgggctggaggaaggtctc
ttcccccacagtctttcggccgaggatccgagccggctcgaagaggaacgtcgactctgc
tatgtcggcatgacacgcgcgatgcgcgagctctatgtgacccacgccgagagccggcgg
ctttacggtcgggaggagtccccgttgccctctcggttcctgcgcgaggtcccgccggga
ttggtcgaggaggtcagggcccgcagcaccgctcgccgcacgacctcgagtccgggtccg
atccggagtccgagcctggcgtcgatgtcgagcggcgatgccggtctgtttaggctcggc
caacgcgtcgtccacccgaaattcggcgagggcgtggtcctgaacagcgagggtcgcggc
gctgcggcacgaatccaggtcaattttcagaaggccggagccaaatggctggttctggct
tatgctcggctcgagcctgcaggttga
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