Candidatus Thioglobus sp. NP1: CRN91_02270
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Entry
CRN91_02270 CDS
T05818
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thin
Candidatus Thioglobus sp. NP1
Pathway
thin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CRN91_02270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thin03400
]
CRN91_02270 (mfd)
Enzymes [BR:
thin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CRN91_02270 (mfd)
DNA repair and recombination proteins [BR:
thin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CRN91_02270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXE61514
UniProt:
A0A344W7X9
LinkDB
All DBs
Position
complement(441138..444566)
Genome browser
AA seq
1142 aa
AA seq
DB search
MSIIYPNNFRPFAAGLTDNWGALFGSSEALALIEFAESNNQVVIYIAKDITHYDEIRKAL
SFFNSSLEILEFSSWEVLAFDHFSPHPDIVSSRLKTLARLSLLKSGIVITTLETMSQRLC
PTDYIDKYSLSLIKGQTLEIETFISKLSKIGYRRVATVMEQGEFSIKGALIDLYPMGTKL
PYRIDLFDNEIDSIRTFDANSQRSIEVINSIYLLPAREFASDHESISTFKSNYLSEFGNT
NGFIYDEVNEGRFPGGIEFYLPLFFEQTSSLFDFFNNKPIIAYRKGLDEEMKIQSNELLE
RFKHCQNSLERLPLEINKVFLNQEQFFKELKDKKQVQIQTSKLEQKAALNFSSSILPPLK
IEAQTKKPLNKLIDFIENFDGKVLIVCESEGRQSVLNDLLSSYNLKALDCLSWMDFIKQN
NKLCITNASLNEGILCNQIAIITENNLFGQDAVNQKRRRRAKHKDFDEAIKSLVEIQLGD
PIVHEHYGVGRYLGLKSKTFDDNQQDFLSLEYANGSILMVPVASLNLISRYSGASSDNAP
LHKLGSQQWTKAKRKASEALYDVAAELLEIYAKRQSQKGFAYPAPSDSYSSFVSSFAFEE
TPDQLKTMDDVLLDMQSDKPMDRLVCGDVGFGKTEIAMRAAFLAVEAGKQVAILVPTTLL
ASQHRQTFNDRFSKFPIMIKSLSRFQNTKEQIQIKSELKEGKIDIIIGTHKLIQGTIEYK
NLGLIIIDEEHRFGVKQKESLKKIRGQSDILTMTATPIPRSLNMALGALKELSIIASPPA
KRTAIQTFVDEWNDESIKEACSRELHRGGQIFVVHNDIDTIDNMAESLSSLMPNINVRVA
HGQMPTKELEQIMADFYHQRFQLLVCTTIIETGIDIPSANTIIINNAQNFGLAQLHQLRG
RVGRSHHKAYAYLVIKSHQSITLDAKKRLDALASLEELGAGFMLANHDLEIRGAGDLLGE
NQSGKISEIGFNLYHDLLKRTIQAIKNNEKFDIKDALVEEVEINTGIACIIPETYLTDVH
ERLILYKRIASASDDDELKELKIEMIDRFGLLPDSTKNLFESTSLKLYSKEIGIDKINIY
DDKSEITLKEKNTVDASKIINLIQTNSQIFQLKNQNTLIYKDTMDADYSRIEKISKLLGS
IV
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgagcattatttatcctaacaactttaggccttttgctgctggtctaaccgacaactgg
ggagcactatttggctcatctgaagcattagcacttatagaatttgctgaatcaaacaat
caagttgttatttacattgctaaagatattactcattatgatgagattagaaaagcgcta
agcttttttaattcatcactagagatcttagaattttcaagttgggaagtccttgcattt
gatcacttttcaccacatccagatatagtttcatcaagactcaaaactcttgcgcgctta
tctttactcaaatctggaatagtaataactacccttgagacaatgtctcaaagattatgt
cccactgactacattgataaatatagtcttagcttaatcaaagggcaaactcttgaaata
gagacttttatttcaaagcttagtaagataggttatcgaagagtagctactgttatggag
caaggtgaatttagtattaaaggggcattaatagatctatatcctatggggaccaaatta
ccctaccgtattgacttatttgataatgaaattgactcaatcagaacctttgatgccaac
tcacaaagatcaattgaagtaataaattctatttatctacttcctgctcgtgaatttgca
tcagatcatgaaagtatttcaacttttaagagtaattatttatctgaatttggaaatact
aatggcttcatttatgacgaagtaaatgaaggtcgttttcctggtggaatcgaattttat
ttaccattattttttgagcaaacaagctcactttttgacttttttaataataagccaatt
attgcttatcgtaagggccttgatgaggaaatgaaaatccagagtaatgaattattagaa
cgctttaaacattgtcaaaattctctagaaagacttcctttagaaattaataaagtattc
ttaaatcaggaacaattttttaaagaacttaaagataaaaaacaagttcaaatacaaact
tcaaaattagaacaaaaagctgcattaaatttttcttcttctatacttcctcccttaaaa
atagaagctcaaactaaaaaacctttaaataaactaattgattttattgaaaattttgat
ggtaaagtcttaattgtttgtgagtctgaaggtcgccaaagtgttcttaatgatctttta
tcgagttacaatttgaaagcattagattgtttaagctggatggatttcataaagcaaaat
aataagctatgcataactaatgctagtttaaatgaagggatattatgtaatcaaattgca
attattaccgaaaataacctctttggccaagatgctgttaatcaaaaaagaagaagacga
gcaaaacataaagattttgatgaggcaattaaaagccttgttgaaattcaattaggtgat
ccaattgttcatgagcattatggtgttggtcgttatttaggtcttaaaagtaaaaccttt
gatgataatcaacaagattttttatcattagaatatgctaatggctcaatacttatggtt
ccagtagcttcacttaatctaatttctagatattcaggggcaagctctgataatgcgcct
cttcataagctgggaagtcaacagtggacaaaagcaaaaagaaaagcatctgaagctctc
tatgatgttgcagcagaacttctagagatttatgctaagcgacagtctcaaaaggggttt
gcttatccagcacctagtgactcttatagctcttttgtttcaagttttgcgtttgaagag
actccagaccaacttaaaacgatggatgacgttcttctagatatgcaatctgataaacca
atggatcgtttagtatgtggagatgtgggctttggaaagactgaaatagcaatgcgagct
gcattcttagctgttgaagctggtaagcaagttgcaatccttgtgccaacaactttatta
gcaagtcaacaccgccaaacttttaatgatcgcttctcaaagttcccaataatgattaaa
tctctttcaagatttcaaaataccaaggaacaaattcaaattaaatcagagcttaaggaa
ggaaaaattgatattattattggcactcataagttgatacaaggaactattgagtataaa
aatttaggattaataattattgatgaagaacatcgttttggtgttaaacaaaaagaatca
ctaaaaaagattcgagggcagagtgacatacttaccatgactgcaacaccaatacctaga
tcattaaatatggcactaggagcacttaaagaactatcaattatcgcctcaccgccggca
aaaagaacagccattcaaacatttgtagatgagtggaatgatgaatcaataaaagaggct
tgctctagggaacttcatagaggtggacaaatatttgttgttcataatgatatagatact
attgataatatggctgaatctttgagcagtctaatgccaaatattaatgtaagagttgct
catggacaaatgcccactaaagaacttgaacaaattatggctgatttttatcatcaacgc
ttccagcttcttgtttgcacaactattattgaaactggtatagatatacctagtgctaat
acaattattattaataatgcacaaaattttgggcttgctcagcttcatcaacttcgggga
agagttggtcgctcgcatcataaagcgtatgcgtatcttgtaattaaatctcatcaatca
ataactttagatgcaaaaaaacgacttgatgctctagcttctctagaagagcttggagca
ggatttatgcttgccaaccatgacttagagatccgcggtgctggtgatttattaggtgaa
aatcaaagtggaaaaatatctgaaattggatttaatttatatcatgatttattaaaaaga
acaattcaagcaattaagaataatgaaaaatttgatattaaagatgcattagttgaagag
gttgaaataaatacaggaattgcctgcattattcctgaaacttatttaactgatgttcat
gagcgactgatactttataaaaggattgctagtgcgagtgatgatgatgagttaaaagaa
ttaaagattgaaatgattgatcgtttcggtttacttcctgactctaccaaaaatctattt
gagtctacctcattaaagctttactcaaaagaaattggaattgacaaaattaacatctat
gatgataaatcagaaatcactttaaaagaaaaaaatacagttgatgcctctaagattatt
aatttaattcaaacgaattctcaaatatttcaattaaaaaatcaaaatactcttatatat
aaggacacaatggatgcagattattcccgtatagaaaaaataagcaaattactaggaagt
attgtttaa
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