Thiohalocapsa sp. PB-PSB1: N838_19485
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Entry
N838_19485 CDS
T07019
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03030
DNA replication
thip03430
Mismatch repair
thip03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N838_19485 (dnaE)
03430 Mismatch repair
N838_19485 (dnaE)
03440 Homologous recombination
N838_19485 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thip03032
]
N838_19485 (dnaE)
03400 DNA repair and recombination proteins [BR:
thip03400
]
N838_19485 (dnaE)
Enzymes [BR:
thip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
N838_19485 (dnaE)
DNA replication proteins [BR:
thip03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
N838_19485 (dnaE)
DNA repair and recombination proteins [BR:
thip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
N838_19485 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
QQO55204
LinkDB
All DBs
Position
complement(4588912..4592592)
Genome browser
AA seq
1226 aa
AA seq
DB search
MENSSDPSLAPHSFVHLHLHTEYSLVDGLVRIKPLVQAVAEAGMPAVAVTDQANLFCLIR
FYKAALAAGIKPIAGTELSVFNPADPAKPHRLVLLMQDQAGYKNLTRLISRAYIEGQRQG
RAQVQRDWVLHAADGLIALSGGAGGDVGRALSGGHRADAEALLDDWLQVFGDRYYLELMR
TGQEQDEDCVEASVDLAIAKGVPVVATNDVAFLRADDFDAHEVRVCIHNGHTLEDPQRPR
QHSPEQFLRTPNEMKLLFSDLPEALENSLEIAKRCNLELNLGKSYLPASPVPAGMTTDSF
FRAESRQGLEWRLQSTFNTEAPDFAEQRKVYDERLKSELDVICQMGFPGYFLIVADFIQW
AKDNAIPVGPGRGSGAGSLVAYALKITDLDPIEHELLFERFLNPERVSMPDFDVDFCMEG
RDRVIDYVAGKYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKVAKMVPFELGMT
LEKALEDSQDLQAAYQDDEAVTAIVDMARKLEGVARNAGKHAGGVVIAPTKLTDFAPLYC
EPGGENLVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALQTINAQRKIQNQAPIDISRID
PNDAHAFALLARCETTAVFQLESRGMKELIKKLKPDSFEDMTALVALFRPGPLQSGMVED
FIDRKHGRADVAYPHPDLETILKPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGKK
KASEMEKQRAIFEQGAVARGVEASKASHIFDLMEKFAGYGFNKSHSAAYALVSYQTLWLK
AHYPAAFMAAVLSADMDNTDKVVTLIDECRSMQLRVEPPKINRSEFRFTSLADGEGTVIY
GLGAIKGVGESAIAAMLEARESDGPFRSIWDFCRRIDLHKANKRVLEALIRAGALDDLGA
VAEPVTKVDASSHRATLMNQLPLALKLAEQQHAQEAAGQADLFAALDEQTAGALEPDPQI
AAQRWPAWDEEARLLGEKETLGLYLTGHPINRYDAELNAMLSTRIGDVLESASVMATPGV
THLRGRDDRDVRTLVGLVVGMRSNKTARGRMASLTLDDRTGRIEVTVFNDVYEPTRELLV
PDAILAITGTLKADDFTGGWTLIARTIRPLEVARAELADHLLLRLDLTDPTRHAAGDDYV
RRLQQTLEPYRVEQDGLPLRIHYLRLGIEGRLRLGDGWRVEPADALLKRLQHVLGDQAVE
VVYQRELTLSSSLPDPAQPPRLSVVG
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaacagctcggatcccagtcttgctcctcacagttttgtgcatctgcatctgcac
accgaatactccctggtcgacggcctggtgcgcatcaagcccttggtgcaggcggtcgcc
gaagcggggatgcccgcggtcgcggtcaccgaccaagccaacctgttctgcctgatccgt
ttttataaagcggcattggcagccggaatcaagccgattgccggcaccgagctgtccgta
ttcaatccggccgatcccgccaaaccgcatcggttggtgctgctgatgcaggatcaggcc
ggctacaaaaatctgacgcggctgatttcgcgcgcctacatcgagggccagcgccagggt
cgcgcacaggtgcagcgagactgggtgctgcatgccgcagatggcctgatcgcactctcc
ggtggggccggtggcgatgtcgggcgggcattgtccggcggtcaccgcgcggatgccgag
gccttgctcgacgactggctccaggtattcggcgatcgctactaccttgaactgatgcgc
accggccaggagcaggatgaagattgtgtcgaggccagcgtggatctggccatcgccaag
ggcgtgccggtggtggcgaccaacgatgtcgcctttttgcgtgcggatgacttcgacgcc
cacgaggtacgcgtttgcatccacaacggtcacaccctggaagacccgcaacgcccgcgc
caacacagcccggagcagttcctgcgcacaccaaacgaaatgaaactgctgttttccgat
ctccccgaggcattggaaaactcgctggagatcgccaagcgctgcaacctggagctgaac
ctgggaaaaagttatttgcccgcgtcaccggtgccggcgggcatgaccaccgacagcttt
tttcgcgccgaatccaggcagggactggaatggcgcttgcaaagtaccttcaacaccgag
gcgccggactttgccgagcagcgcaaggtctacgacgagcgtttgaagagcgaactcgac
gtcatctgtcaaatgggttttccgggctactttctgatcgtcgcggatttcatccaatgg
gccaaggacaatgccattccggtcggtccggggcgtggctccggggcaggttctctggtt
gcctatgcgctgaaaatcactgatttggatccgattgagcatgaactgctgttcgagcgc
tttttgaatcccgagcgcgtctccatgcctgacttcgacgtggacttctgcatggaaggc
cgcgatcgcgtgatcgactatgttgcgggcaaatacggccgcgatgcggtctcgcagatc
atcaccttcggcaccatggcagcgaaggcggtggtgcgcgatgtcggtcgggtgctcggc
catccctacggctttgtcgacaaagtcgcgaaaatggtgcccttcgagcttggcatgacc
ctggagaaagcactggaagacagccaggacttgcaggccgcttaccaggacgacgaggcc
gtcaccgccatcgtcgacatggcgcgcaagctcgaaggggtggcgagaaacgcgggcaaa
cacgccggtggtgtggtcatcgcccccaccaaactcaccgactttgcgccgctgtactgc
gagcctggcggcgagaacctggtgacccaatacgacaaggacgacgtcgagcaggccggt
ctggtcaagttcgattttctcggtttgcgcacattgaccatcattgattgggcgttgcag
acgatcaacgcccaacgcaagatccagaaccaggcgccgatcgatatcagccgcattgac
ccgaatgacgcgcacgccttcgcgctgctcgcgcgctgtgaaaccacggccgtattccag
ctcgaatcccgcggcatgaaggaattgatcaaaaaactgaaaccggacagcttcgaggac
atgaccgcgttggttgcgttattccgccccggtccattgcaatccggcatggtggaggat
ttcatcgatcgcaagcacggtcgtgccgatgtcgcctatccgcatccggacctggaaacc
atcctgaagcccacctatggcgttatcctgtatcaggaacaggtcatgcaaatcgcccag
gtactggccgggtattcgctgggtggtgccgacctgctgcgccgcgccatgggcaaaaag
aaagcatcggaaatggaaaaacagcgggcgattttcgaacagggcgcggtagcgcgcggt
gtcgaggccagcaaggcttcgcacatattcgatttgatggaaaaatttgccggttacggc
ttcaacaagtcgcactcggccgcctatgcgctggtgtcctatcaaaccctctggctcaag
gcccactatccggcggcgttcatggccgcagttctgtccgcggacatggacaacaccgac
aaggtggtcacgttgattgacgaatgccgctccatgcagctgcgcgtggagccaccgaag
atcaaccgatccgagttcaggttcaccagtcttgccgatggcgagggcaccgtgatctat
ggcctaggagcaatcaaaggagtcggcgagtcggccattgcggccatgctcgaggcacgc
gagtcagacggcccattccggagtatctgggatttttgccgtcgcatcgacctgcacaag
gcaaacaagcgcgtactggaagcattgatccgtgccggcgccttggatgatctgggtgct
gtcgcagaacctgttacaaaagtcgacgccagcagccatcgcgccaccttgatgaaccaa
ttgccattggcattgaaactggccgaacagcaacatgcgcaagaagccgccggtcaagcg
gatctgtttgccgcgctggatgaacagacagcgggtgcgctggagcccgacccgcagatc
gccgcccagcgctggccggcgtgggatgaagaagcccggttattgggcgagaaggagacg
cttggtttgtatctgaccggccatcccatcaatcgctacgatgccgagctgaacgccatg
ctcagtacacgcatcggtgatgtgctggaaagcgcctcggtcatggcaacacccggcgtt
acgcatttgcgcggcagggacgatcgcgatgtgcgcaccctggtcggactggtggtgggc
atgcgcagcaacaagaccgcccgcgggcgcatggcctcgttgaccctggacgatcgtacc
ggccgcatcgaggtcacggtattcaacgatgtctacgaaccgacccgagaattgctcgta
ccggatgccatccttgccattaccggcacattgaaagcggatgacttcaccggaggttgg
actctgatcgcgcgcacgattcgccccctcgaggtggcacgcgcggaacttgctgatcac
ctgctgctgcggctggacctgaccgatccgacccggcatgccgcgggtgatgactatgta
cgacgactgcaacagacgctggagccctatcgtgtcgagcaggatggcctgccattgcgc
atccactatctgcgcctaggaatcgaaggccgattgcggctcggcgacggctggcgcgtc
gagcccgccgatgcgctgctgaaacgcctgcagcatgtgcttggcgaccaggctgtcgag
gtggtctatcagcgcgaattgacgctaagctccagcctgccggacccggcgcagccaccg
cgtctcagcgtggttggttga
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