Thiohalocapsa sp. PB-PSB1: N838_32165
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Entry
N838_32165 CDS
T07019
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Pathway
thip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N838_32165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thip03019
]
N838_32165
Enzymes [BR:
thip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N838_32165
Messenger RNA biogenesis [BR:
thip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N838_32165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QQO58207
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All DBs
Position
7631668..7633098
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AA seq
476 aa
AA seq
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MQRLLTCSDPIADLQPDSAWDSAPNSELESEAEFAGVSEHAAAMTLPTKTDLATVVKPDR
QRADKACQPRAVILAPTRELAVQIHRDAESIGRHTGLRFGLVYGGTGYQRQRDEVAAGVD
LLIGTPGRLIDYFKQRVFNFKSVQVVVLDEADRMFDLGFIKDIRFVLRRMPPVTKRLGML
FSATLSYRVTELAYEHMNDPRMVEIAPEQVTVDRVRQACYMVANDEKVRLLIGLIRGFQD
ARVMIFINTKREGEWVWGFLEGNGLKSAMLSGDVPQKKRLSLLRRFQTGELPIMVATDVA
ARGLHIPGVTHVINYDLPEDAEDYVHRIGRTARAGEAGDAISFVCETYAFCLPDIETFIG
SKIEVNPVSESMLADIDYRSRVRVPRRAREGRERDNGRRTRSGKRSQGGKRSQGRRRKGD
QPQGNGEHPVQTSASVETQPAAEVSPRTADAAGDQHAGKPRRRRRRKPVDDSVPSA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgactgctgacgtgctcagacccgattgcggatttgcagcctgattcggcttgg
gattcggctccgaattcggagttggaatcagaagcggagttcgccggtgtgtccgagcac
gcggcagcaatgacattaccgacaaagaccgatttggcaacagtcgtcaagcccgatcgg
cagcgcgccgataaagcatgccagccgcgcgcggtcattctagcgccaactcgggagctt
gcggtacagattcatcgggatgccgaatcgatcggacgccataccggcctacgattcggt
ctggtctatggcggcactggctatcagcggcagcgcgacgaggtggccgccggggtcgat
ctgctgattggcacgccgggacgactgatcgattattttaaacagcgcgtgttcaatttc
aaatcagtacaagtggtggtactcgacgaggccgatcgcatgttcgatctgggctttatc
aaagatatccgcttcgtattgcgacgcatgccgccggtcacaaagcgtcttggtatgttg
ttctcggcaaccctgtcgtatcgcgtgaccgagctagcctacgagcatatgaatgatccg
cggatggtcgagatcgcccccgagcaggtcacggtcgatcgtgtacgacaagcctgctat
atggtggccaatgatgaaaaagtgcggctgttgatcggcctcatccgcggattccaggat
gcacgcgtgatgatctttatcaacaccaagcgcgagggtgaatgggtttggggctttttg
gagggcaatggtctgaaatcggcgatgctctccggcgacgtaccgcaaaaaaagcggctc
agcttattgcgtcgttttcagactggcgagctgcccatcatggtggccaccgacgttgct
gcgcgagggctgcatattcccggtgttacccatgtaatcaactacgacctgccggaagac
gccgaggactatgtgcaccgcatcgggcgtaccgctcgcgccggggaggccggagacgcg
atcagctttgtctgcgagacctatgcgttttgtctgccggatatcgagactttcatcggc
agcaagatcgaggtcaatccggtctcggaatcgatgctggcggatatcgactaccgcagc
cgggtgcgcgtgccgaggcgtgcgcgggaaggccgcgagcgcgacaatgggcgacgcacc
cgctctggaaaacgatctcagggtgggaagcgctcacagggccggcgacggaagggcgat
cagccgcaaggcaatggcgagcatccggttcaaacatccgcatccgtggaaacccagccg
gccgcggaagtctcaccgcggacggctgatgctgcaggcgatcagcatgcgggcaagccg
cgccgccgacgccgccgcaagcctgttgatgacagtgtgccgagcgcttag
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