Tarenaya hassleriana (spider flower): 104806689
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Entry
104806689 CDS
T04125
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03013
Nucleocytoplasmic transport
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104806689
03015 mRNA surveillance pathway
104806689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104806689
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104806689
5.6.2.5 RNA 5'-3' helicase
104806689
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104806689
mRNA cycle factors
Common to processing body (P body) and stress granule
104806689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
ATPase
Helicase_RecD
nSTAND3
PhoH
AAA_16
SRP54
AAA_22
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
104806689
NCBI-ProteinID:
XP_010530003
LinkDB
All DBs
Position
Unknown
AA seq
1258 aa
AA seq
DB search
MDSQQNNLFETASQPDTAADAYTFLEFNTQGESEFDYPEFRSPAAWPTPSDSLSIPDPSD
RGGAAGDHHSEASSPSPLSSPAPGSSSKGGRGGVGGGGGGGGSSSSQVDALAAGMGNLNF
EETGDDDAFDYGKGDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHL
VRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALK
DMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDL
EKPGVDDEPQSVQLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKK
RIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRVNQGV
PIDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQMVRNTLPR
RFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA
PSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQ
LKDEQGELSSSDEKKYKALKRATEREITQSADVICCTCVGAGDPRLANFRFRQVLIDEST
QATEPECFIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQ
VQYRMHPALSEFPSNSFYEGTLQNGVTINERQTSGIDFPWPVPNRPMFFYVQLGQEEISA
SGTSYLNRTEAANVEKIVTTFLKSGVVPGQIGVITPYEGQRAYIVNYMSRNGALRQQLYK
EIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL
SKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFYGGGAGIMGNENS
TADRRGGRGRAVGSYLPPGPLNGARPGLHPAGYPMPRVPLQPFPGGPPSQPYAIPARGPV
GAVPHVPQPGNHGFGSGRGNPIGGHLPHQQATQQNVGTIGPSFNFPLESPSSQPSAGGPL
SQPGYVNNLPVQGSQTFRDGFSMGGISQDFLGDDFKSQGSHVPYNVADFSTQASQSGYAV
DYATQGAHGAFSGNFLNQNSQVGYSRFGGGNDFMSQEYMAHGSQGLFTQAGFTDPSQDDG
QKNQYGVNNPSHLQAQGLPNSLYSQPFSHYNTQPLNLSNPQQSQPGQGSQNPKLPYNG
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacagaacaacctcttcgagacggcgtcgcagcccgacacagccgccgac
gcatacacctttttggaattcaatacccagggcgagtctgagttcgactaccctgagttc
cgatcaccggcagcgtggcccacgccctctgattccctctccatccctgacccatccgat
cgcggaggtgccgccggagatcaccactccgaggcttcgtcgccttccccgttgtcttcg
ccggctcctggaagtagctccaaggggggacgcggtggagttggaggaggcggtggtggt
ggtggtagtagtagcagtcaggttgatgcattggcggctgggatggggaatttgaacttc
gaggagaccggggatgacgacgcttttgattatggaaaaggggatttcacagagcacgca
tgcaagtattgtggtatctcgaatccggcttgcgttgtgaggtgcaatgttgcgtcttgt
cggaagtggttctgcaattcgaggggaaatacctcgggctctcatattgtcaatcatttg
gttcgagcaaaacacaaggaagtttgtctccataaggacagccctctcggggaaacaatt
cttgagtgctacaactgtgggtgtcgaaatgtcttcctcctcggattcatttcagcaaaa
acagagagtgttgttgtccttctttgtagagaaccttgtctaaatgtaaatgccctgaag
gacatgaactgggatctaagtcagtggtgtcctctgatcgatgataggtgtttcctaccg
tggcttgttaaggttccatctgaacaagaacagttgagggcacgtcaaattagtgcacaa
caaataaacaagatagaggaattatggaagactaatcctgatgctacacttgaagatctt
gaaaaacctggtgttgatgatgaacctcagtctgttcaattgaagtatgaagatgcatat
cagtatcaaaatgtgttcgcacctcttatcaagcttgaagcagattatgacaaaatgatg
aaagagtctcaaagcaaggataatgtcacagttcgctgggatattggtcttaacaagaag
cgtattgcatatttcgtcttcccaaaggaggacaatgaattgcgtttagtgccaggtgat
gaactccgactgcgttattctggagatgcagcgcatccagcatggcagtcagttggacat
gtgatcaagctaactgcacaagaagaggttgctcttgaactccgtgtcaatcagggggtt
cctattgatgtgaaccatgggtttagtgttgatttcgtatggaagagtacgagctttgac
cggatgcagggagcaatgaagacttttgctgtagatgaaacaagtgtgagtgggtatatt
taccaccacttattgggacatgaagttgaggctcagatggtgcgtaacacactacctcgt
cgttttggagcacctggtctaccggaactgaatgcatctcaggtttttgcagtgaagagt
gtccttcaaaagcctattagtctaattcaaggtcctcctgggactggtaaaactgtgact
tctgcggcgattgtttatcacatggccaaacagggccagggacaagttctcgtttgtgcc
cccagtaatgttgccgtagaccaactagctgaaaagataagtgctactggtttgaaggtt
gttcgactgtgtgcaaaatcaagggaagctgtaagttctcctgttgagcatttgaccctt
cactaccaggttaggcatcttgacacatctgagaagagtgaactccataagctgcagcag
ttgaaagatgaacaaggtgaactgtcaagcagtgatgaaaagaaatacaaagcacttaaa
cgagctacagaacgcgagataacccaaagtgctgatgtcatatgctgcacttgtgttggt
gcgggggatccacggttggcaaattttagatttcgacaggtacttattgacgagtctact
caagcaacagaacctgagtgttttatccctctggtccttggagcaaaacaggctgttctt
gttggcgatcattgccaacttggtcctgtcattatgtgcaagaaagcggcccgtgctggc
ttggcacaatctctttttgaacgcctggtgctgcttggtgttaagccaattaggttacag
gttcaataccgtatgcacccagctttgtctgagtttccttccaacagtttttatgaaggc
actctccagaatggagtcacgattaatgaaaggcaaacatcggggattgactttccctgg
cctgtgcctaatcgtcccatgtttttctatgtccagttgggacaagaggagatcagtgct
agtggaacttcgtatttgaatcgaactgaggccgctaacgttgagaagattgtgaccact
ttcttaaagagtggagtagttcctggccagattggagtgataaccccatacgagggacag
agggcatatattgtaaattacatgtcgagaaatggtgctctcagacaacaactttacaag
gaaattgaggtcgctagtgttgattcttttcaaggaagggaaaaagattacatcatattg
tcctgtgtgagaagcaacgagcatcagggcattggatttcttaatgatcctaggaggctc
aatgttgctcttacccgtgctcgttatgggattgttattcttggaaaccctaaggttctc
agtaaacagcctctgtggaatggcttgctgacgcattacaaggaacatgagtgcttggtc
gaggggcctctgaataatttaaagcaaagcatggtacaatttcagaaaccaagaaagatt
tacaatgaccggaggctgttttatggtggtggggctggaattatgggaaacgaaaactct
actgctgataggagaggtggtcgtggaagggctgttggctcttatctgcctcctggccct
ctcaatggcgctagacctggactccatccagctggatatccaatgcctagggtaccactt
caaccctttcctggtggtcctccttctcagccatatgccattccagctcgtgggcctgta
ggtgctgttcctcatgttccccaacctggaaatcacggttttggtagtggacgtggaaat
ccaatcggcggccaccttccccaccaacaagcgactcagcaaaatgttgggactattggt
cctagttttaactttcccctggagagtccaagtagccagccttctgcgggtggtccgcta
tctcaacctggatatgtaaataatttgcctgtccagggaagtcagaccttcagagatgga
ttttctatgggtggcatatcgcaggatttcttgggtgatgactttaagagccagggatct
catgttccttacaatgtggctgacttttctactcaggcctcacagagtggatatgctgtt
gattatgccacacaaggagcccatggggcattttctgggaacttcctaaaccagaattct
caagtgggttattctcgttttggtggaggaaatgatttcatgtcccaggagtacatggca
catgggtcacaaggtctttttacccaggctggctttaccgatccctcacaagacgatggc
cagaagaatcaatatggtgtgaacaaccctagccatcttcaggctcagggtctgccaaat
tcactctattcgcagcctttctcacactacaacacacagccactgaacttgtccaacccc
cagcagtctcaacctggccagggctctcagaacccgaaacttccctacaatggctga
DBGET
integrated database retrieval system
