Tarenaya hassleriana (spider flower): 104813617
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Entry
104813617 CDS
T04125
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104813617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104813617
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104813617
mRNA degradation factors
5'-3' decay
Decapping complex
104813617
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104813617
NCBI-ProteinID:
XP_010539588
LinkDB
All DBs
Position
Unknown
AA seq
822 aa
AA seq
DB search
MDGLDSGSGVKKALGTEDLKQFGDNSTDAGGAVFDASQYAFFGNDVVEEVELGGLEDEED
ESPIDGQYTKDFLFDKEEGEDSRTLSGVDDLASTFSKLNRDADGFGNTGTITDSGSRQNS
FVAEWSQGQGEDYPNWYSRQILDSDAMSDSKGWATQNFSSQHLVEQKNLHRTASYPEPQH
QQHQPHHHQQFSSEPILVPKSSYSSYPRPGGRSPEQHLGHLNIPYHSGGLQMGSSPNLPS
FPSSQPQLAGMHHGSPQFAANMSQFRPVLPVNDRPPSQWMNRQNMFPGDSSGILNDMPPR
QLPQQQYPQQNGLMRPHMMPQLQGPQNRLPHPMQPPLGHLQGMQPQLFNSHLSRSPSLGQ
YDTFLGIGDLRDGRTGSAHGNRQNIRFHQQGFDNMVQRREFGWPHFRSKYMTSDEIENIL
RMQLAATHSNDPYVDDYYHQARLAKKSAGAKLKHHFCPNHLRDLPPRARANNEPHAFLQV
DALGRVPFSSIRRPRPLLEVDPPNSSNSGNLEQKDPDKPLEQEPMLAARVTIEDGLCLLL
DVDDIDRYLEFNQFQDGGNQLRQRRQALLEGLAASLQLVDPLDKNGHKGGLSSQDNFVFL
RIISLPKGRKLLARYLQLLFPGSELMRIVCMTIFRHLRSLFGVLSADRETAETTNKLTKI
IEFCIHRMDLGPASACLAAVSCSSEQPPLRPLGSPAGDAASIVLKSTLDRATELLRANNY
NNSSMALWRASFDEFFNLLMKHCVRKYDGIMQALNSQHFASEMSEAAAQAIVREMPIELL
RASFPHISEQQKRILMEFLKQSMLGSSDAGTDSHQKSESFLS
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggacgggcttgatagtgggagcggtgtcaaaaaagctctcggaactgaggatcttaag
caattcggagacaattctacagatgcaggtggtgctgtatttgatgcttctcagtatgca
ttctttgggaatgatgtcgtcgaggaggttgagttgggtggattggaagatgaagaggat
gaatcgccaatagatggacaatatacgaaagactttctgtttgataaggaagagggtgaa
gattctaggacattgtctggggttgatgatcttgcttctacattttccaagttgaatagg
gatgccgatggatttgggaacacaggaaccatcacagatagtggatcaagacaaaattct
tttgttgctgagtggtctcaaggtcaaggagaggattatccaaattggtacagccgacag
atattggactctgatgctatgtcagatagcaaaggttgggcaacacagaatttttcttct
cagcatcttgttgaacaaaaaaacctgcacagaacagcgtcttatcccgagccacaacat
cagcagcatcaaccccaccatcaccaacagttctccagtgaaccaattcttgttccaaag
tcttcttacagctcatatcctcggccaggtggcagatccccagagcagcacttaggacac
ctgaatataccatatcattccggtgggctgcaaatgggatcctcaccaaacctcccctcc
tttccgagttctcagcctcaattggctggcatgcatcacgggtcaccacagttcgcagcg
aacatgtctcaatttcgtcctgttcttcctgtgaatgaccgcccgccatctcaatggatg
aatcggcaaaatatgtttccaggggatagttctggtattctgaatgatatgccgccgcga
cagctacctcaacaacagtatcctcagcaaaatgggttgatgcgcccacatatgatgcct
cagctgcaaggcccacaaaataggttaccacatccgatgcagccacccctcgggcactta
cagggcatgcagccccagttatttaattctcatctttctcgatcaccgtctttgggccag
tatgatacatttcttgggattggtgacctgagagatggaaggacaggatcagctcatggg
aacaggcagaatatacgcttccaccaacaaggttttgacaatatggttcagaggagagag
tttgggtggccacattttcggtcgaaatatatgacctctgatgaaatagagaatattcta
cgaatgcagcttgcagctactcatagcaatgatccttatgtagatgattactatcaccag
gcccgccttgcaaagaaatctgctggggcaaagctgaagcatcatttctgtccaaatcat
ttgagagatcttccaccccgtgcacgtgctaacaatgagccccatgcttttctccaggtg
gatgctcttggaagggttcctttctcttcaatacgtaggcctcgtccccttcttgaagtg
gaccctccaaattcaagcaactctggtaatctagagcagaaagatcctgataagcccctt
gaacaagaacccatgcttgcagctagggtcactatcgaggacggtctctgcctcctcctc
gatgtagacgatattgatcgttacttggagtttaaccaatttcaagatggtggaaatcag
ttgagacaacggcgacaggctttgctggagggtcttgcagcatcccttcagctggttgac
ccgctcgataagaatgggcataaaggcgggctttcctcacaggacaactttgtctttctt
aggattatttcgcttccaaagggacggaagcttcttgcaagatatcttcagcttcttttc
ccaggcagcgagctaatgcgaatagtttgcatgaccattttccgtcatttaaggtccttg
tttggtgtcctctcagcagatcgtgaaacagcagaaaccacaaacaagctcacaaaaata
atcgagttctgtattcacagaatggatcttggaccagcaagtgcctgtctggctgcggta
tcttgttcctcagagcagccacctcttcgacctctagggagccctgccggagatgccgct
tccatagttctgaaatctacccttgacagagctaccgagcttcttcgagctaataattac
aacaattcaagcatggctctttggcgggcttcctttgatgagttcttcaaccttctgatg
aagcattgcgtgaggaaatatgatggaatcatgcaggccttgaattcacaacactttgcg
agcgagatgtctgaagccgctgcacaagccattgtccgggaaatgcccattgaactttta
cgtgcgagtttcccacacatcagtgagcagcaaaagaggatactcatggaattcctcaaa
cagtctatgctcgggagctcggatgctggaactgacagccaccagaaatccgagtctttc
ctgagttga
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