Tarenaya hassleriana (spider flower): 104815973
Help
Entry
104815973 CDS
T04125
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03013
Nucleocytoplasmic transport
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104815973
03015 mRNA surveillance pathway
104815973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104815973
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104815973
mRNA cycle factors
P-body specific factors
104815973
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
BRAP2
Motif
Other DBs
NCBI-GeneID:
104815973
NCBI-ProteinID:
XP_010542909
LinkDB
All DBs
Position
Unknown
AA seq
495 aa
AA seq
DB search
MKDPLQKRKVIVRHLPPSITQSGLLSHIHARFADRYNWLAFHPGKSSHKNQKYSRAYIEF
KTQEDVYEFATFFNGHVFVNEKGSQCKAIVEYAPSQRVPKQCGKKDPREGTICKDPGYLE
FLKIIARPVENLPSAEIQLERKEAEQSGTMTDTLIVTPLMEFIRQKRAAEIETQGLSDFR
RASRRGRAASANKPNSRSSKRSSEKKKYVEKDSAKNMTRKAKSAYATSSKQENKHLTSSE
VPENENDTVIESSFPGINLIMESGKKKILLLKAKDRNSPTNSLPQSEEQNETASVGSSSA
SRQSQKSDVGRRLIRGILLKHEPQLSQSSSSVHPEQKAPSSEVENSKRPPRSANTRADGK
FAGKDYHGPGALSEKQERRTRNKEGPDRIMWAPLHRTDGLNVSEDHQSSSAANNGEVKDE
MLVLKTVEGAASSGSHHSYSPENGSSRHTSRRVGARNRKDGVLGMTGDGKSLRRGGSGLN
PHEKQMWVQKSSSGS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccgttgcagaagaggaaagtgatcgtacggcacttgccgccgtctattact
cagtctggtctcttgtcccatatccacgctcgtttcgccgatcgttacaattggctcgct
tttcatcctgggaaatccagccataagaatcagaagtattctcgggcctacatagagttc
aagactcaagaggatgtttatgagtttgctacatttttcaacggccatgtgtttgttaat
gagaagggatctcaatgcaaggctatagttgaatatgcgccttcacagcgtgtgccaaaa
caatgtggcaagaaggatcctcgtgaagggactatttgcaaggatcctggttatctggaa
tttcttaagatcatagctagacctgttgagaaccttccgagtgctgaaatccagttggaa
agaaaagaagccgaacagtctggtacaatgacagacactcttattgttactcctctgatg
gaatttatacggcaaaaacgtgctgctgagattgaaacacagggtttgtcagattttcga
agagcgagcagaagaggcagagctgcatctgctaataagccaaattcaaggtcttcgaaa
cgaagctccgaaaagaaaaagtatgttgaaaaggacagtgcaaagaacatgacccgaaaa
gctaagtcagcctatgccacgagctctaagcaagaaaataagcatttaacttccagtgaa
gtcccagaaaatgaaaatgacactgttatcgaaagctctttcccagggattaacttgatt
atggagtctggaaagaaaaagattttgctcttgaaagcaaaggacagaaacagtcctact
aactctttgccacagtcagaggagcagaatgaaacggcttcagtgggaagttcatctgct
tccagacaaagccagaagagtgatgttggtaggaggttgatcaggggcatacttttgaaa
catgagccacaactgagtcaatcttcatcttctgtacatcctgagcaaaaagcgccatca
tcagaggtggaaaacagcaaacgacctcctcggtctgccaacacacgagcagatggtaaa
tttgcagggaaagactatcatggtcctggtgccctcagtgagaagcaggagagacgcacg
agaaacaaagaaggacctgatcgtattatgtgggctccgcttcatcgtactgatgggttg
aatgttagcgaggaccatcagtcatcttcagcagcgaataatggagaagtgaaagacgag
atgcttgtcctgaagactgttgaaggggcagcttcctctggcagccaccattcatattct
ccagagaacggttcttcaagacataccagtcgccgtgttggagctcgtaatagaaaagat
ggcgtcttggggatgacaggtgatggtaaatctttgagaagaggtggcagtggtttgaat
cctcatgagaaacaaatgtgggttcagaagtcatcttccgggtcatga
DBGET
integrated database retrieval system
