Tarenaya hassleriana (spider flower): 104824534
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Entry
104824534 CDS
T04125
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104824534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thj03021
]
104824534
03019 Messenger RNA biogenesis [BR:
thj03019
]
104824534
Transcription machinery [BR:
thj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104824534
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104824534
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
104824534
NCBI-ProteinID:
XP_019059316
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MVIEMENSRRSFDRSRDLGPIKKQRLTEEAIRPPNPKTRQFLTQRPNGSVSVPPAPRLRP
GGREAGTNSVDPSRSIRQPQPVNTHHELLSQYKSALAELTVNSKPIITNLTIIAGENLHA
AKAIVATICNNILEVPDDQKLPSLYLLDSIVKNIGRDYIKYFVARLPETFIKAYRQVDHP
MHSSMRHLFGTWKGVFHPQTLQIIEKELGFNPRSDSSPSVVATTRADPSSQRPTHSIHVN
PKYLEQQCLQQSGRAKRMVTDVPGIISNSAGDSDRLERILSLAAGGSWVDPSAKSNNIRR
PPRESLSEPLYEKDITSIPGEYDYASELPQHSRLGNKKIGSRTTAEGHDRQWYGTMGSVP
EMISGQRNGLNTKGRISRLSNSGPSGPGRSNISVSNSWKNSEEEEFMWDVQSRFSETDVT
NINPRNEPWAPDDSESENPLLRSNELPDAGSRFELDNSTGSFSSEQKDRNAYGCGVPSPR
SLQDSLIQHNSEDYSSIVGLTSTVTRKGIQPRPVPAPVRASGSGILPHSGSGSDRQSLLH
DSDSVQTLAKQDFRRTTSLPQRGDPRALRFPVKHQSITRDDPVRSLSSGSQFRNQDRPEL
PDAPGVSPHHVTSEASSQLNMSNLLAAVMKSGILSNNSTSGASKEEEKLKLQYLSTVSRP
MTVGPSLPNSVANEDPSARLKVGKPLPSPGSCSSSPAIATATQTSDENIKASNPISSLLS
SLASKGLISASKTELQSLSRCQVPSESRDHSPDHSTNSSISATAVPSDIKPEASMNKGPS
AGPKAKGPASPSETTRLDSEDLVGLQFRPDKIREFHPSVINSLFDGLLHHCTSCGIRLKL
KEQLERHAKVHDEKNMNKKSRVWYPKADDWVAGKPGKLEPDLAKVQREPEAMEEDGPAVP
ADENQCACILCGEMFEDYFSQEMDQWMFKAAVHLTIPSANIAAKGLIVHANCLTDNSMQE
LAIVSAIKEENDV
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggttattgaaatggagaattcacgtagatcgtttgatagatccagagatctcggtccg
atcaagaaacagcgcttgaccgaggaagcgattcggcctccgaacccaaagactcggcag
tttctgacgcagagaccgaacggctcagtgtccgtacccccggcgccgaggcttcgaccc
ggaggcagagaggcgggtaccaatagcgttgacccgagccgaagcatacgtcagccgcag
cctgtgaacacgcaccacgagctgttgagccagtacaagtcggcactggcggagcttact
gtcaattcgaagcccataataacgaacctgacgataatcgcgggagagaatcttcatgct
gcgaaggccatcgtagccacgatttgcaacaacatcctcgaggtaccagatgatcagaaa
ctaccgtcattgtacctgttagacagcattgtgaagaatattggaagggattacattaag
tactttgttgcaaggctaccagagacattcatcaaggcatatagacaagttgatcatcct
atgcattctagtatgcggcatctttttggaacctggaaaggagtctttcatccacagaca
cttcagattattgagaaagaacttggctttaatcctagaagtgatagctcgccgtctgtt
gtagccacaaccagagctgacccatcatctcagcgcccaactcatagcattcatgtgaat
cccaagtatctagaacaacagtgtctacaacaatcgggcagggcaaaacgaatggttact
gatgttcctggtatcatatccaactctgctggggattcagatagactggagagaattttg
agcttagcagctgggggttcatgggttgatccatctgctaaatcaaataacattcgaaga
cctccaagggaatcacttagtgaacctctttatgagaaagatatcacatcaattcctggt
gaatatgattatgcttctgaattaccacagcactctagattgggaaacaagaaaatcggt
tcaaggactacagctgaagggcatgataggcaatggtatggaactatgggcagtgttcct
gagatgatttctggccagaggaatgggttaaacaccaaaggcagaatttccagattgtca
aattctggtccaagtggtcctggtagaagtaatatcagcgtgtctaatagttggaaaaac
tccgaagaagaggaatttatgtgggacgtgcaatcgagattttctgaaactgatgtaacc
aatatcaacccgaggaatgaaccttgggcaccagatgactcagagtctgaaaatcccctt
ttgagatcaaatgaacttccagacgcagggtcaaggtttgagctggataattcaaccgga
tcattttcaagtgagcaaaaagatcgaaatgcatatgggtgcggggtaccttctccaagg
tcgttgcaagatagtcttatccagcataattctgaagattattcttccatcgttgggctg
acctctactgttacgagaaaagggattcagcctcgacctgttccagctcctgttagggcc
tcaggttccggaattttgccacactcaggatctggatcagatagacagtcactattacac
gattcagattcagtacagactttggccaagcaagattttaggagaactacttcccttcct
caacgtggtgatcctagggctttgaggtttccagtgaagcatcaaagtatcaccagggat
gatcctgtgcgatccctatcttcaggtagtcagtttaggaatcaagataggcctgaacta
cctgatgctccaggtgtttcaccacatcatgttacttcagaagcttcaagccagttgaac
atgagcaatctactggctgcggtcatgaagagcggaattctttctaataactctactagt
ggtgcatcaaaggaggaggagaagctgaaattgcaatacctctccacagtctctaggcct
atgacggttggtccatcattgccaaactcagtggccaacgaggatccatcggctcgttta
aaagttgggaagcccttgccatcgcctggttcatgttcatcgtctcctgctattgctaca
gcaactcagacttcggatgagaatataaaggcctcaaatcctatatcgagcctcttgagc
tccttagcttcaaagggtttgatatcagcctcgaagacagagttgcaatccctctctcgg
tgccaggttccttctgaatcacgggaccatagcccagatcattctaccaatagctctata
tctgcaactgctgttccatcagatattaagccagaggcttcgatgaacaagggtccatcc
gcaggacctaaagcgaaagggcctgcttcaccatctgaaacaacaagattggattcggaa
gacctcgtaggactgcagtttaggccagacaaaatccgggaatttcacccctcagtgatc
aatagtctctttgatggccttctgcatcactgcacctcatgtggcattcgcctgaaactc
aaggaacagcttgaaaggcacgcaaaggtgcatgatgagaagaacatgaacaaaaaatca
cgagtttggtatccaaaggctgatgattgggtggcaggaaaacctgggaagctggaacct
gatcttgcaaaagttcagagagagcctgaggcaatggaggaggatggtccagcagtccct
gctgatgagaatcaatgtgcatgtattttgtgcggagagatgtttgaggactattttagt
caagaaatggatcaatggatgttcaaggcggcggttcacctgaccattccttcagccaat
attgcggccaagggtctcatagtgcatgccaattgcttgaccgataattcaatgcaggaa
ttggccattgtgagtgccataaaagaggaaaacgatgtctag
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