KEGG   Thermococcus sp. P6: A3L12_04250
Entry
A3L12_04250       CDS       T05739                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
thy  Thermococcus sp. P6
Pathway
thy03030  DNA replication
thy03410  Base excision repair
thy03420  Nucleotide excision repair
thy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:thy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3L12_04250
   03410 Base excision repair
    A3L12_04250
   03420 Nucleotide excision repair
    A3L12_04250
   03430 Mismatch repair
    A3L12_04250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:thy03032]
    A3L12_04250
   03400 DNA repair and recombination proteins [BR:thy03400]
    A3L12_04250
Enzymes [BR:thy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A3L12_04250
    6.5.1.6  DNA ligase (ATP or NAD+)
     A3L12_04250
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     A3L12_04250
DNA replication proteins [BR:thy03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    A3L12_04250
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     A3L12_04250
DNA repair and recombination proteins [BR:thy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     A3L12_04250
   NER (nucleotide excision repair)
    Other NER factors
     A3L12_04250
   MMR (mismatch excision repair)
    Other MMR factors
     A3L12_04250
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ASJ10562
UniProt: A0A218PCE9
LinkDB
Position
complement(793148..794827)
AA seq 559 aa
MRYSELSNLYTRLEKTTLKTLKTRLVADFLKRTPDELLDVVPYLILGKVFPDWDERELGI
GEKLLLKAVSMATGVPERELEGAIRNTGDLGESVALALKRKRQKSFFSQPLTIKRVYETF
VKIAEATGEGSQDRKLKYLVNLFMDASPEEGKYLTRTVLGTMRTGVAEGLMRDAIAEAFE
VSPELVERAYMLTSDFGYVAKIARTEGNEGLSKVKMQVGKPVRPMLAQNAASVEEALKEM
GGKAAFEIKYDGARVQVHRDGERVLIYSRRLENVTKSIPEVVEAIRESVRARKVIIEGEL
VAVGDDGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDVLYVDGDTLIDLPFSERRKR
LEEAVSESGRIKLARQLVTDDPGEAEAFYREALELGHEGLMAKRLDSVYEPGNRGKKWLK
IKPTMEDLDLVIVGAEWGEGRRAHLLGSFLVAAFDTNSGEFVPVGKVGSGFTDEDLAEFT
RMLKPLIVREEGKYVEIEPRVVIQVTYQEIQKSPKYKSGFALRFPRYVALREDKSPEEAD
TIERIAQLYRLQERFKAGK
NT seq 1680 nt   +upstreamnt  +downstreamnt
gtgaggtattcggagttaagcaatctttacacccgccttgaaaaaaccacgctgaaaacc
ctgaagacccgcctcgtggccgatttcctcaaaaggactcccgatgagcttcttgacgta
gtcccttacctgatcctcggaaaggtgttcccggactgggacgagcgcgagctcggtatc
ggtgagaagcttctcctgaaggccgtctccatggccacgggcgttcccgagagggagctc
gagggggcaatcaggaacacgggggacctcggcgagagcgtggccctggcactgaagaga
aagaggcagaagagcttcttctcacagcccctgacgataaaaagggtttacgagacgttt
gttaaaatagcggaggctacgggcgagggaagtcaggacaggaagctgaagtacctcgtg
aacctcttcatggacgcctccccggaggagggcaagtaccttacgagaacggtcctcgga
accatgaggacgggcgtcgccgagggactgatgagggacgccatagccgaggcctttgag
gtttctccggagctcgtggagagggcctacatgctcacgagcgattttggctatgtggca
aagatcgccaggactgaggggaacgaaggcctttctaaagtgaaaatgcaggtggggaag
ccggtaaggccaatgctggcccagaacgcggccagcgtggaggaagcccttaaggaaatg
gggggaaaggccgcctttgagataaagtacgacggtgcgcgcgttcaggtccacagggac
ggcgagagggttctcatctattcgaggaggctcgagaacgtgacgaagtccatccccgag
gtggtggaggccataagggagagcgtcagggcccggaaggttattatcgagggggagctc
gttgccgtcggagatgacggaagaccccgccccttccagtacgttctccggaggttcagg
aggaagtacaacatcgaggagatgatagagaagatccccctcgagctgaacctctttgac
gtgctctacgtcgacggcgataccctcatagacctgcccttctccgagcgcaggaagagg
cttgaggaagcggtttccgaaagcgggcggataaaactggcgagacagctggttacggac
gacccgggtgaggctgaggcgttctacagggaggccctcgagctcggccacgagggtctg
atggccaaaaggctcgattcggtttacgaacccgggaacaggggtaagaaatggctcaag
ataaagccgacgatggaggatctggacctcgtcatcgttggtgcggaatggggggagggg
agaagggcccacctccttggatcgttcctcgtggccgcttttgacaccaacagcggtgag
ttcgttccggttggaaaggtggggagcggtttcacggacgaggacctcgccgagttcacg
agaatgctgaaacccctgatagtccgggaggagggcaaatacgttgagatagagcccagg
gtggttatacaggtcacctatcaggagatacagaagagtccaaaatacaaaagcggtttt
gcccttcgtttcccgcgctacgtcgccctgagggaggacaaaagccccgaggaagcggac
accatagagcgcatagcccagctctacagactgcaggagaggttcaaagcggggaagtaa

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