Tuwongella immobilis: GMBLW1_25450
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Entry
GMBLW1_25450 CDS
T06428
Name
(GenBank) transcription-repair coupling factor : Transcription-repair-coupling factor OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=mfd PE=3 SV=1: CarD_CdnL_TRCF: DEAD: Helicase_C: TRCF
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tim
Tuwongella immobilis
Pathway
tim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GMBLW1_25450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tim03400
]
GMBLW1_25450
Enzymes [BR:
tim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GMBLW1_25450
DNA repair and recombination proteins [BR:
tim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GMBLW1_25450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
VTR98337
UniProt:
A0A6C2YJY0
LinkDB
All DBs
Position
1:1063666..1067034
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AA seq
1122 aa
AA seq
DB search
MPTLEGSLRLEQLRDLTRLLETNPNWPELLGALRANASATIDGAWGSAAALATAALAEQT
PGTLLVVLPHSGDLTAWGEDLLGFRGERPMIFPAWESWPIDPNSRDEIAGQRLRLVQQLD
RNPPKVLLTSLAALMQPVPTAGDLESARRWLRVGESIDLDALLEWLVARGYKRVEAVEHA
GEFSRRGGIVDLFSPDAEDPIRLELFGDEIESIRSFSAQSQRSLDDLKEAAILGGTPGSS
SSGGSAKHPTGHLTEHLPPGSWVILSELAELREQGKVFLERVSDPTGLFSVAGTFAQLVA
RPSVHVTAMPSASLEKTCHLHVVSVERFSGNVNRVRDELDSIATTETVLIAAHNEPEKRR
LEEVLAAGKLATSDRLRLVMGQVRAGFRIVSHDSQAGVIVLGSHELFHREWTPTTPTGNA
SGLPKRRIESRAIDSFLELNPGDYVVHVAHGIAIYRGMRMLDRGQTAPPPMMPGEVEDDT
SVAAHRPAREEHLVLEFRDGLLVYVPVSKIDLVQKYVGGSRTLPELSKFGGTSWQRKKDK
VEEAVHDLASDMLQLQAVRASQTGFAYPTNSEWQTAFEATFPYQETPDQLAAISEIYGDM
EKPRSMDRLLCGDVGYGKTEVAIRAVFKAIDNGKQVALLVPTTVLAEQHYRTFRDRLAAY
PFEVEVISRFRSAAQQKKVLKQLAEGTVDVIIGTHRLVSKDVRFKDLGLVIIDEEQRFGV
DHKERLKHLRATVDVLTLSATPIPRTLHLALLGIREISNLETPPPERIPVETRIIRWDEQ
IIRNAILREFNRDGQVYFVHNRVHDIDAVKRALQSIVPEARIVIGHGQMAEGELEAAMLK
FVRKEADILLATTIIESGLDIPNANTIFINEAENYGLADLHQLRGRVGRQKLRAYAYLIL
QPNKLVTETAAKRLKAIEEFTDLGAGFKIAMRDLEIRGAGNILGNEQSGHIASVGYELYC
QLLENAVRGMKKLPLKTPLEVNLDLPWPAYLPREYVPTQKLRIEVYRRLARIRDLRKLDD
FREELRDRYGALPDPAEWLLRQTEIRLLAARWQVQSIHRDNRELAFTYRVAKRIHELVKL
SGGQIRVIDEKTAFMRLTPADDDNPTLYDRLRSLLRIGMDPV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccctggaaggttcgctgcggctggaacaactccgcgatctgacacgcctactc
gaaaccaatcccaattggccggagttgctgggagcgttgcgcgccaatgccagcgcaacc
atcgacggcgcatggggttcggctgcggccctggcaaccgccgcactcgcggagcagaca
cccggcacgctgttggtggtgctgccgcattccggcgatctcaccgcttggggcgaggat
ctgctcggctttcgcggcgaacgaccgatgatctttcccgcgtgggagagttggccgatc
gatcccaacagccgggatgaaatcgccgggcagcggttgcggttggtgcagcaattggat
cgcaacccgccgaaagtgttgctcacctcgctggctgcgctgatgcagccggtcccgacc
gcgggcgatctcgaatccgctcggcgctggctgcgcgttggggaatcgatcgatttggat
gccttgttggaatggctggtggcccgtggctacaaacgggtggaagccgtcgagcatgcg
ggcgaattctcccgacgcggggggattgtcgatctgttttccccggatgcggaagacccg
attcggttggaattgttcggcgacgaaatcgaatcgattcgcagtttctcggcccaatcg
caacgatcgctggatgatttgaaagaagcggcaatccttggtgggacacctgggagcagt
tccagcggcggatcggccaagcatccgaccggacatttgaccgaacatttgccccccgga
tcgtgggtgattctttcggaactggcggagttgcgggaacaggggaaagtgtttctggaa
cgggtgagcgaccccaccggattattctccgtcgcggggacatttgctcaactggtggcc
cgtccgagtgtgcatgtgacggcgatgccatcggcctcgctggaaaagacctgccatttg
catgtcgtttccgtggaacggtttagcggcaatgtcaaccgcgtgcgggatgaactcgat
tccatcgccaccaccgagaccgtcttgattgccgcccacaatgaacccgaaaagcgccgg
ctggaagaggtgttggcggcgggcaaactcgccaccagcgatcggttgcggctggtgatg
ggccaagttcgagcgggattccgcatcgtcagccacgattcgcaagcgggcgtgattgtc
ttgggcagtcacgaactgttccatcgcgagtggactccgaccaccccgaccgggaacgcc
agcgggttgcccaaacgccggatcgaatcgcgggccatcgacagtttcttggagttgaat
cccggcgattatgtcgtgcatgtggcgcacgggattgccatttatcgcggcatgcgcatg
ctggatcgtggccagactgcgccgccgccgatgatgcccggcgaagtcgaggacgatacc
agcgttgccgcgcatcggcccgcccgcgaagagcatctcgtcttggaattccgcgatggg
ttgctggtatatgttccggtcagcaaaatcgatttggtgcaaaagtatgtcggcggctca
cgaacattgccggaattgtcgaaattcggcggcacatcgtggcagcgcaaaaaggacaaa
gtcgaagaagccgtccacgatttagcctcagacatgctgcaactgcaagcggtgcgggca
tcgcaaaccggcttcgcctatccgacgaattccgagtggcagaccgccttcgaagcgacc
tttccataccaagaaacgccggatcagttggcggcgatttccgaaatttatggcgacatg
gaaaagccgcgctcgatggatcggctcctctgcggcgatgttggctacggcaagacggaa
gtggcgattcgtgcggtgtttaaggcgattgacaacggcaagcaagtcgccttgctggtg
ccgacgacggtgctggccgagcagcattaccgcaccttccgcgatcggctggcggcgtat
ccgttcgaggtggaagtcatcagccgattccgctcggcagcgcagcagaaaaaagtgctc
aaacaactcgcagaggggacggtcgatgtgattatcggcacccaccgtctcgtctcgaag
gatgtgcggtttaaggacttggggctggtgattatcgacgaagagcagcgatttggcgtc
gatcacaaggagcgattgaagcatctgcgggcgacggtggatgtgctgacgctgtcggcg
acgccgattccccgcacgctgcacctggcgctgttgggcatccgcgaaattagcaacctg
gagacaccgccgccggagcggattccggtggagacacgcattattcgttgggatgaacaa
atcatccgcaatgcgattctgcgggaattcaatcgcgatggccaagtctactttgtgcat
aatcgcgtgcatgacattgatgcggtcaagcgggcattgcagagtatcgtgcccgaagcg
cggatcgtcatcggccacgggcagatggcggagggggaactcgaagcggcaatgctgaag
tttgtgcgcaaagaagccgatatcctgttggcgacgacgatcatcgaaagcgggttggac
attcccaacgccaataccattttcatcaatgaggcggagaattacgggctggccgatctg
caccaacttcgcggtcgagtcggtcggcagaaattacgggcgtatgcgtatttgattctg
cagccgaataaactggtcaccgaaaccgccgccaaacgcctcaaggccatcgaagaattc
accgacttgggcgcgggcttcaagattgccatgcgggatctggaaattcgcggggcgggg
aacattctgggcaacgaacagagcgggcacatcgccagcgttggctatgagttgtactgc
caactgttggagaatgcggttcgcggcatgaagaagttgccgttgaagacgccgctggaa
gtcaatctggatttgccgtggccggcgtatctgcctcgggaatatgtgccgactcagaaa
ttgcggatcgaagtctatcgccgattggctcgaattcgggatcttcgcaagctcgacgat
ttccgcgaagaactccgcgaccgctacggggcgctgcccgatccggcggagtggctgttg
cggcagaccgagattcgcttgcttgcggcacgctggcaggtgcagagtatccaccgagac
aaccgcgagttggcattcacgtatcgcgtggcgaaacgcatccacgaattggtcaagctc
agcggcggccaaattcgcgtcatcgacgaaaagacggccttcatgcggttgacccccgca
gacgacgacaatccgactttgtacgaccggttacgatcgctcttgcgaattggaatggat
ccggtataa
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