Thiomonas intermedia: Tint_0290
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Entry
Tint_0290 CDS
T01227
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tin
Thiomonas intermedia
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tin03016
]
Tint_0290
Enzymes [BR:
tin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Tint_0290
Transfer RNA biogenesis [BR:
tin03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Tint_0290
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Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
ADG29702
UniProt:
D5X4A1
LinkDB
All DBs
Position
310602..311162
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AA seq
186 aa
AA seq
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MFDTPLEPPPEPPVALRLFFALWPGQALRRHIAEHQTLWQWAPPARPAAAAKLHLTVLFM
DRVPADQVTTLLEVGERVARNWADFALTLDRAAVWHHGGIAHLAPSQPPAELLWLRAALA
EQVGQRGLPFDARAFAPHVTLARRAQATQPPIAFPPLHWTVRGFALVHSVLGTGRYDVIG
RWPLNR
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacacgccgctcgaacccccgcctgagccacccgttgcgctgcggctgtttttc
gcgctctggccggggcaggcgttgcgccgacatatcgccgagcatcagacgctttggcag
tgggcgccacccgcgcgaccggcggctgcggccaaactgcatctcaccgtgttgttcatg
gacagggtgcccgcagaccaggtgacgacgctgctggaggtgggcgaacgggttgcgcgc
aactgggccgatttcgcgctcacgctcgaccgggcggcagtgtggcaccacggcggcatt
gcccatctcgcaccctcgcagcccccggcggaattgctgtggttgcgcgccgcgctggcg
gagcaggtcggccagcgcggtctgccgttcgacgctcgcgccttcgcaccgcatgtcacg
ctggcgcggcgggcgcaggctacgcagccgccgatcgcattcccgccgctgcactggacg
gtgcgcggcttcgccctggtgcactccgtgctgggcaccgggcgttacgacgtcatcggg
cgctggccgctcaatcgatga
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