Thermoanaerobacter kivui: TKV_c19040
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Entry
TKV_c19040 CDS
T03397
Symbol
ligD
Name
(GenBank) end joining DNA repair protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tki
Thermoanaerobacter kivui
Pathway
tki03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TKV_c19040 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tki03400
]
TKV_c19040 (ligD)
Enzymes [BR:
tki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TKV_c19040 (ligD)
DNA repair and recombination proteins [BR:
tki03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TKV_c19040 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AIS53052
UniProt:
A0A097ATC0
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All DBs
Position
1840187..1841110
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AA seq
307 aa
AA seq
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MSMIEEKISPMLASSSDPFDSPEWIYEIKWDGSRTIAFLSNKTRLQDRKLVDITHQFPDL
ALLHKQIKAKEAILDGELVVLKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDIL
YLDGKPLVELPLIERKDILRKTVKESEVIKISDFIFEHGKMLFEETGKRGLEGIVAKKAD
SKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
LKAFYEVAKGIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRAPSFIQFEYNVK
PEECRFE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgatagaagaaaaaatatcacctatgctggcatccagcagtgacccttttgat
agccccgaatggatatatgaaatcaaatgggatggttcaaggactattgcctttctttca
aataaaacaagacttcaagatagaaagcttgttgatataacccaccagtttccagattta
gcattacttcataagcaaataaaagcaaaagaagcaatacttgacggtgaacttgtagtt
ttaaaaaacggcaagcccagttacaaaagcattatgtcgagaaagcatcaacaaaattta
gtaaaaataaatcttttaagcaagataatgcccgtaattttcataacatgggatatattg
tacttagacggtaaacctcttgttgaattgccacttatagagagaaaagatatacttaga
aaaacagttaaagaaagcgaggtcataaaaatatcagattttatatttgaacatggaaaa
atgctttttgaagagacaggcaaaagaggacttgaaggaattgttgccaaaaaagcagat
tcaaaatatttaataggaaaaaggagtaaactctggcttaagtcaaaacattttattgta
ataaatgccgttattatagggtacagaactgacaaaacagccctcatactggggctttac
gatgaggagaataatttaataaacataggaagttgtgaatcaggcctatcccagaaggaa
ttaaaagcattctatgaagttgccaaggggataaaagccccagataattattataacttt
aaagaaaaaaatgtgcagtggttaaaacctctgctaacatgtaaagtgagatttatggaa
tggtctgaaaacatgaaaatgagagcaccttcttttattcaatttgagtataacgtaaaa
ccagaagagtgcaggtttgaataa
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