Thermoanaerobacter kivui: TKV_c22980
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Entry
TKV_c22980 CDS
T03397
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tki
Thermoanaerobacter kivui
Pathway
tki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TKV_c22980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tki03400
]
TKV_c22980 (mfd)
Enzymes [BR:
tki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TKV_c22980 (mfd)
DNA repair and recombination proteins [BR:
tki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TKV_c22980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF924
AAA_22
IstB_IS21
RecG_dom3_C
UB2H
Baculo_PEP_C
Motif
Other DBs
NCBI-ProteinID:
AIS53425
UniProt:
A0A097AUF0
LinkDB
All DBs
Position
complement(2198760..2202263)
Genome browser
AA seq
1167 aa
AA seq
DB search
MFTRQIQDLKEVKTIEESLIEGNGPVLAYGLTDSQKAHIAHHIMNKFNKTVLFIAYDDVE
ARRIYEDLYSFSFGNASLYPKREALFYKIDAASQELASQRLKAIKKLVESKPHAVVASID
AVIGKLIPIELFKKYQFTFKVGDTINLENTIKNLLTMGYERVQMVEGKGQFSLRGGIIDI
YPSTEEYPYRIELFDDEIDSIRIFDTITQRSLENVNEVSLFAATEFIVESQHIKYGISNV
SGHLNSYLSKIRKLKSGIAEKLQQKFEGIMEEITESKRVENINELIDYFYKDVYSIIDYL
PEDAIVILDESSRIKQRINNIHMEFNENFKTLLEKGEVLPEQNKLLFDYEDILKRCRFRF
LLIMNTLAKPDSELQPKAIVNFVAKTMHPFHGKMDILVDDLKYYKNTGYRVLLLSGNQER
GRILKETLDSYGIDAIVAEDSEYDIQKGQVVIYPASISKGFEYVDAKFAVISDGEIFGQT
KKARKTVKIKNADKIKSFTELVAGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKITYAGG
DTLFVPVEQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIKLYAKRQ
MVKGHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTE
VALRAAFKAVADGKQVAFLCPTTILAQQHYTNFLQRFKEFPVKIEMLSRFRTPKEQAQIV
KALAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEKIKKLKESIDVLSLSA
TPIPRTLHMSLIGIRDMSILENPPEDRYPVETYVVEFNEELIKDAILREMGRGGQVYFVY
NRINGIEKMASFIKELIPNCRVAVAHGRMEESCLEKVMIDFLNGEYDVLVSTTIIETGLD
IPNVNTIIVYDADKMGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEF
TEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIDAVGYDMYLKLLEEAIRNLKGEVIEEEVT
TTVDIKVNAYIDSSYIEDENLRLEMYKKIASIESKKDMEEISEELIDRFGDYPKPVEVLL
EIAYLKAIASKLRITEITERGNYVILKFKDTKSVNLDTIEKLTKEYRGNLMFSNQIPPYL
TYKFNKKETIQKELIGLVEKIKNLQME
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtttacacgacagatacaagatttaaaagaagtcaagactattgaagaatctttaata
gaaggcaatggacctgttttagcttatggacttaccgattcacaaaaagctcatattgct
caccatattatgaacaaattcaataagactgttttatttattgcttatgacgacgtagaa
gcgaggagaatctacgaggatttatattcttttagttttggaaatgcttcattgtatcct
aaaagagaagcgctgttttacaaaatagatgctgccagccaagagcttgcatcgcaaagg
cttaaagccatcaaaaaactggttgaaagcaaacctcacgctgttgtcgcttcaatagat
gcggttattggaaagcttattccaatagaattgtttaaaaaatatcaatttacttttaaa
gtcggagatactatcaatttggaaaatactataaagaatcttttgacgatgggttatgaa
agggttcaaatggtagaaggcaaaggtcaatttagtttaagaggaggtataattgatatt
tacccttctactgaagaatatccttataggattgaactttttgacgatgaaatagattct
ataaggatattcgatactattactcagaggtctttggaaaatgtaaatgaagtgagtctt
tttgcagcaacagaatttattgtagaaagccagcacataaaatacggaatctcgaatgtg
tcaggtcatttaaattcttatttatctaaaataagaaaactaaaaagcggtattgccgaa
aaattgcagcaaaaatttgaagggattatggaagaaataacagagtctaaaagggttgaa
aatatcaacgaactcatagattatttttataaagatgtgtattctatcatcgattatttg
cctgaagatgcgattgtaattttggacgaaagttctcgaattaaacagagaataaacaat
attcacatggaatttaacgaaaattttaaaactttgttagagaaaggagaagtactacct
gagcaaaacaaacttctttttgactatgaggacatattaaaaagatgcaggttcagattt
ctgttgattatgaacactttagcaaaacctgacagtgaactacagccaaaagcaattgtt
aattttgtagcaaagactatgcatccttttcacggcaaaatggatatattagttgacgat
ttaaaatattacaagaataccggttacagagttttactattaagtggaaatcaagagaga
ggaaggattctcaaagaaacccttgatagttatggaattgacgcaattgtggctgaagac
agtgaatacgatatacaaaaagggcaagttgtgatatatcctgcatcgataagcaaaggt
tttgaatatgtagatgcaaaatttgctgttataagcgacggcgaaatttttggacagaca
aaaaaagcgagaaaaactgtaaagattaaaaatgcagataaaataaagagttttacagag
cttgttgcgggttcatatgttgttcatgtgaattacggaataggcaaatacgagggcata
gaaaaaataaaagtggatgggattataagggattacctaaagataacctatgcaggtgga
gatacactttttgtaccagttgagcaattggacctcgtgcaaaaatacgtgggacctact
gacaatcctcctaagttaaacaagctgggaggaagtgagtggctaagggcaaagagaaaa
gctaaaaaagctgtggaagaccttgcgaaagacttgattaagctttatgccaaaagacag
atggtaaaaggacatgctttttctcctgatacaccatggcaaaaggagtttgaagagcag
tttccttatgaagagacagaagaccagttaaggtgcataaaagaaattaaagaggacatg
gaaaaggataggcccatggatagattgctttgtggggatgtaggctacggcaaaacagaa
gtggccttaagagctgctttcaaagcggttgctgatggaaaacaggttgcttttctgtgc
ccaacgactatactggcgcagcagcattatacaaattttctacagcgattcaaagagttt
cctgttaaaatagagatgctcagccgctttagaactcctaaagaacaagcgcaaatagtt
aaggctttagcagaagggaatattgacattattgttggtacccacaggcttttgcaaaat
gacataaagtttaaggacttggggcttttaattatagacgaggagcagagatttggggtt
gttcacaaagaaaagataaaaaagcttaaagaaagtatagatgtgttatctttgtcagcg
actcctattccaaggactcttcacatgtccttgattggcataagagatatgagcatactt
gaaaatccgcctgaagatagatatccggtagagacttatgtagtagaatttaatgaagaa
ttaataaaagatgcaatactgagagaaatggggagaggaggacaagtttattttgtatac
aaccgcataaacggcatagaaaaaatggcttcgtttataaaagaattgattccgaactgt
agagtagctgtcgctcacggtcggatggaagaaagctgccttgaaaaagtgatgatagac
tttttaaacggggaatacgatgttttagtcagcactacgattattgagacaggccttgat
atacccaatgtcaatacgattatagtttatgatgcggataaaatgggactttctcagctg
tatcaattaagagggcgcgttggaaggtcaaataggctcgcttacgcatactttacttac
agaaaggacaaagtcttaagtgaagttgcggagaagagattagaggcgataaaagagttt
actgaatttggttctggctttaaaatagcgatgagagacttggagataagaggggcggga
aatcttttaggagctgaacaacatggccatatcgatgcagtgggatatgacatgtatctc
aagcttttagaagaagccataagaaatttaaagggagaagtcatagaagaagaggtcact
actactgtggatataaaagtcaatgcttacatcgattcttcctatatcgaggatgaaaat
ttaagactggaaatgtataaaaagatagcctctattgaatctaaaaaggatatggaagaa
atttcagaggagcttatagacaggtttggtgattatcccaagccggttgaagtactactt
gagatagcttatttgaaagccattgcttctaaactgcgcataactgaaataacagagagg
ggcaattatgttattttaaaatttaaagatactaagtcagtaaatttagacacaatagag
aaactcacaaaagagtatagggggaatctaatgttttcaaatcaaattccaccttacctt
acttacaaattcaacaaaaaagaaacaatacaaaaagagctaattgggcttgtagaaaag
ataaaaaatttgcagatggagtaa
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