KEGG   Thermococcus kodakarensis: TK2140
Entry
TK2140            CDS       T00226                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tko  Thermococcus kodakarensis
Pathway
tko03030  DNA replication
tko03410  Base excision repair
tko03420  Nucleotide excision repair
tko03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tko00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TK2140
   03410 Base excision repair
    TK2140
   03420 Nucleotide excision repair
    TK2140
   03430 Mismatch repair
    TK2140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tko03032]
    TK2140
   03400 DNA repair and recombination proteins [BR:tko03400]
    TK2140
Enzymes [BR:tko01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TK2140
    6.5.1.6  DNA ligase (ATP or NAD+)
     TK2140
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TK2140
DNA replication proteins [BR:tko03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TK2140
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TK2140
DNA repair and recombination proteins [BR:tko03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TK2140
   NER (nucleotide excision repair)
    Other NER factors
     TK2140
   MMR (mismatch excision repair)
    Other MMR factors
     TK2140
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Tcp10_C DNA_ligase_OB_2 TPR_1
Other DBs
NCBI-ProteinID: BAD86329
UniProt: Q9HHC4
LinkDB
Position
complement(1918057..1919745)
AA seq 562 aa
MSDMRYSELADLYRRLEKTTLKTLKTKFVADFLKKTPDELLEIVPYLILGKVFPDWDERE
LGVGEKLLIKAVSMATGVPEKEIEDSVRDTGDLGESVALAIKKKKQKSFFSQPLTIKRVY
DTFVKIAEAQGEGSQDRKMKYLANLFMDAEPEEGKYLARTVLGTMRTGVAEGILRDAIAE
AFRVKPELVERAYMLTSDFGYVAKIAKLEGNEGLSKVRIQIGKPIRPMLAQNAASVKDAL
IEMGGEAAFEIKYDGARVQVHKDGDKVIVYSRRLENVTRSIPEVIEAIKAALKPEKAIVE
GELVAVGENGRPRPFQYVLRRFRRKYNIDEMIEKIPLELNLFDVMFVDGESLIETKFIDR
RNKLEEIVKESEKIKLAEQLITKKVEEAEAFYRRALELGHEGLMAKRLDSIYEPGNRGKK
WLKIKPTMENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPHSGEFLPVGKVGSGFTDEDLV
EFTKMLKPYIVRQEGKFVEIEPKFVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPE
EADTIERVAELYELQERFKAKK
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgagcgatatgcgctactctgaactggccgatctctatagacggctcgaaaagaccacg
ctcaagaccctgaagacaaagttcgttgccgattttttaaaaaagactccagacgagctc
cttgagatagttccatacctaatcctcggaaaggtctttcccgattgggacgagagggag
ctaggcgtgggagagaagctcctaataaaagctgtctctatggcaacgggagtccccgaa
aaggagatagaagactccgttagggacactggcgacctgggagagagcgttgctttggcc
ataaagaaaaagaagcagaagagcttcttctcacagccgctcacgataaagcgtgtttac
gacacctttgtcaagatagcggaggcccaaggcgaaggaagccaggacaggaagatgaag
tacctcgccaacctcttcatggacgctgaaccggaggaaggcaagtacctggcgaggacg
gttttggggacgatgcgcactggagtcgctgagggaattcttagggatgcaatagctgaa
gccttcagggtgaagccagagctcgttgagagggcttacatgctgacgagcgacttcgga
tacgttgccaagatagccaagctcgagggcaacgaggggctctcaaaggtcaggatacag
ataggcaagccgatcaggccgatgcttgcccagaacgcggccagtgttaaagatgccctc
atcgagatgggtggggaagcggccttcgagataaagtacgatggcgcgagagtacaggtg
cacaaggacggggacaaagtcatcgtgtattccagaaggcttgagaacgtcacgagatca
atcccagaagtcattgaggccataaaagcggccctgaagccagagaaagccatagtcgag
ggagaacttgtcgcagttggagaaaatggacggccaaggcccttccaatacgtgcttagg
cgcttcaggaggaagtacaacatcgacgagatgatagagaagataccgctcgaactgaat
ctcttcgacgtcatgttcgttgacggcgagagcctgatagagactaagttcatcgacagg
aggaataagcttgaagaaatagtgaaggagagcgagaagataaagctcgccgaacagctt
ataacaaagaaagttgaggaagcggaggccttctacaggagagcacttgagctcggccat
gaggggcttatggcaaagaggcttgattccatctacgaaccggggaacagaggcaagaag
tggctcaagattaagcccacgatggagaacctcgatctcgtcatcatcggtgcagagtgg
ggagagggaaggagggcccatctgcttggttcgttcctcgttgctgcctacgacccgcac
agcggcgagttcctgcctgtgggtaaagtcgggagcggcttcacagacgaggacttggtc
gagttcacgaagatgctcaagccatacatagtacgccaggaaggcaagttcgtcgagata
gagccgaagttcgtcattgaggtcacctaccaggagatacagaagagcccgaagtacaag
agcggcttcgccctgagattcccgcgctacgtcgcccttagggaagacaaaagcccagaa
gaggccgacacaattgaaagggtggcggagctctacgagctccaggagaggttcaaggcg
aagaagtga

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