Tessaracoccus lapidicaptus: TLA_TLA_01467
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Entry
TLA_TLA_01467 CDS
T06975
Symbol
ligC_2
Name
(GenBank) DNA ligase C
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tla
Tessaracoccus lapidicaptus
Pathway
tla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TLA_TLA_01467 (ligC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tla03400
]
TLA_TLA_01467 (ligC_2)
Enzymes [BR:
tla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TLA_TLA_01467 (ligC_2)
DNA repair and recombination proteins [BR:
tla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TLA_TLA_01467 (ligC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
VEP40131
UniProt:
A0AA95D1T1
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All DBs
Position
1:complement(1571890..1574055)
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AA seq
721 aa
AA seq
DB search
MAEHVVIRAGEHEVRMTSPDKELWPGAGMADGAPVTKRDLADYLLTVADQFLHLNGDRPM
TLQRFPEGIDGEEFFSKRPPQGAPDHLRRVMCTYPSRRRHEQLVFDEPADLVWAAQMGTL
TFHPWPVRTPELDNPDELRIDLDPQPGRDFHDAVTAALALRDVMAEAGLTAYAKTSGNRG
VHVYARIRPTHEFQDVRHGVIGIARELERRMPELVTTSWWKEERGERVFVDFNQANRDRT
IAAAYSPRPLPGAPVSTPLSWDELPDAHPRDLTLRTVPALLRRRPCPWSDIDDEPGDVAG
ALALWEADLERGLGELNFPPDYPKMPGEPPRVPPSKRRSDRADDDYLAPKAERDAEWGTA
IAPPYGPMLAKAVKKLPTGDFLYEPKWDGFRSIIWRSGDEVEIGSRNSRPMTRYFPEIVR
AVVDNFPDHSVIDGEIILVDPTTGDRLNFDLLQQRIHPAASRIKKLSEATPASFVAFDLL
ALGQENFVERPFRERRAALEKALADAEAPIHLTRATLDPAVAEQWFEQFEGAGLDGIVAK
PLGEPYVEDKRVMSKYKHERTADCVVAGYRLYRGESDAIGSLLLGLYTDDGVLNSVGVIG
AFPMERRRELFAELQPLVTTFEDHPWAWAQPEETSPDNRDQSFPRTPTAAAHSRWNAKKD
LSFTPLRPERVVEVRYDHMEGDRFRHTAQFVRWRDDREPESCTYAQLDEPVSYDLGEVLG
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcacgtagtcatccgggcaggcgagcacgaggtgcgcatgacgtcgcccgac
aaggaactgtggcccggcgccgggatggccgacggcgcccccgtcaccaagcgcgacctc
gccgactacctcctcacggtggccgaccagttcctccacctcaacggcgaccgccccatg
accctgcagcggttcccggagggcatcgacggcgaggagttcttctccaagcgcccgccc
cagggcgctccggaccatctgcgtcgcgtgatgtgcacctatccgtcccgccgacgacac
gagcagctggtcttcgacgagccggcggacctcgtctgggccgcgcagatgggcacgctg
accttccacccgtggccggtgcgcacgcccgagctcgacaaccccgacgagctgcgcatc
gacctggacccgcagcccggccgcgacttccacgacgccgtcaccgccgcgctcgccctc
cgcgacgtcatggcggaggcgggcctcacggcctacgccaagacctccggaaaccggggt
gtccacgtctacgcccgcatccggccgacgcacgagttccaggacgtccggcacggcgtc
atcgggatcgcgcgggagctggagcgccgcatgcctgagctggtcacgacgtcgtggtgg
aaggaggagcgcggcgagcgggtcttcgtcgacttcaaccaggccaaccgcgaccgcacc
atcgccgcggcctactcgccccgcccgctgcccggggcgcccgtgtcgacgccgctgtcc
tgggacgagctgcccgacgcccacccccgcgacctcaccctccggaccgtccccgcgttg
ctgcggcgcaggccgtgcccgtggagcgacatcgacgacgagccgggcgacgtcgccggc
gcgctcgccctgtgggaggcggacctggagcgcgggctgggggagctgaacttcccgccc
gactatcccaagatgcccggcgaaccgccgcgcgtgccgcccagcaagcgccgctccgat
cgcgccgacgacgactacctggcgccgaaggccgaacgcgacgccgagtggggcaccgcc
atcgcgccgccctacggccccatgctggcgaaggcggtcaagaagctgcccaccggcgac
ttcctctacgagccgaagtgggacgggttccgctccatcatctggcggtccggcgacgag
gtggagatcgggtcgcgcaactcgcgccccatgacccgctacttccccgagatcgtccgc
gccgtcgtcgacaacttccccgaccactcggtcatcgacggcgagatcatcctcgtcgat
cccaccacgggagaccggctcaacttcgacctcctccagcagcgcatccacccagccgcg
tcgcggatcaagaagctcagcgaggccacgcccgcgagtttcgtcgcgttcgacctgctg
gcgctcgggcaggagaacttcgtcgagcggcccttccgggagcgccgcgcggcactggaa
aaggccctggccgacgccgaggcgcccatccacctcacgcgcgcgacgctcgatcccgcc
gtcgcggagcagtggttcgagcagttcgagggcgccgggctggacgggatcgtcgccaag
ccgctcggcgagccgtacgtcgaggacaagcgcgtgatgagcaagtacaagcacgagcgg
accgcggactgtgtggtggcgggctaccggctctaccgcggcgagtccgacgccatcggc
tccctgctcctcgggctctacaccgacgacggtgtcctcaactccgtgggcgtcatcggg
gccttcccgatggagcgcaggcgcgagctgttcgccgagctgcagcccctggtcacgacg
ttcgaggaccatccgtgggcctgggcgcagccggaggagacgtcgccggacaaccgcgac
cagtcgttcccccggacgccgacggcggccgcacactcgcgctggaacgcgaagaaggac
ctgtcgttcaccccgctgcggccggaacgcgtcgtcgaggtgcgctacgaccacatggag
ggcgaccggttccggcacacggcgcagttcgtgcgctggcgcgacgaccgggagccggag
tcgtgcacgtatgcccagctcgatgaacccgtgagctacgacctcggcgaggtgctgggc
gggtga
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